BAC Information

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BAC

Clone NameMSMg01-488A04
Chromosome9 (Build37)
Map Location 37,676,036 - 37,676,638
singlet/doubletsinglet
Overlap genenone
Upstream geneFez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877
Downstream geneOlfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488A04.T7 (MSMg01no488_a04.b1)MSMg01-488A04.TJ (MSMg01no488_a04.g1)
ACCAG566837AG566838
length689749
length of high quality
(start - end)
614 (20 - 633)618 (77 - 694)
definitionCHROMAT_FILE: MSMg01no488_a04.b1 PHD_FILE: MSMg01no488_a04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:48 2005CHROMAT_FILE: MSMg01no488_a04.g1 PHD_FILE: MSMg01no488_a04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCACTATTCCGAGAGGATCCGCGGAATTCATCAGTTTCTGGGAATCTC
TAGTTTGTGCCAGAGACCTGGAACAAAGAAAGTTTTAGGGAGTCTATGAT
GGTATCTCTAGCTGAGACTTCTAGCAGTGGGGTATATGAAGCTTAAAGTG
GACACCTCTAGTAGCAAGCAGGACTCCCAGTGGAGGGATAAAGACACCAA
CCCACCCACAAAACCTTAACTCTATATTTCTCCTGCCTACAAGAAATGCA
AGGACAAAGATGTAGCAAAGACTAAAGGAATGGCCAATCAATGCCTGGCC
CAACCTGAGACACAAACTGTTGGGAGCAACCTTATTTGAACATTTACTGC
CTTAAGTCTAGGCCTCTGTGGGAAAGTACTAGCCCAGCTGAGTACAAATA
GACATAGATCCTGAAGTCAGCAGAGAACAAATAGCTATAAATCTTCTGGA
TAGGTGCCTAATAACCCATTCTGTTCTGATCTTCCTGCTGAACTGTTTAC
CCAGTCAATATCCTGCTCCTGGGAATAGGTGCATTACTCAGAGACAAAGT
GACCCCCTCCCTTTCACTCCTCTTCCTGCTCCTATGAGTATATAACCTGT
GTGGGAAAAATAAAAATTTGTCAGCTTGATCATGAGACTTGCTGTCCATT
CTTTGTGTTTCTTTTTTCCCGCATTCTCTTCAAGGTGCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAATGTCACTGAAACCAAGTG
TTGCCCAAGCAGCTTTCTGTTCAACATCAGAAGAGATCTTGAGGTAGATA
AGGATTTGTCATTGTACTGGCTAGCCTGGTCATTCTTGAAGCTACTGGAG
AAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAGAGAAAAGAAGAGAA
GAGAAGAGAAAAGAAAAGAAAAAAGAAAAAAGAAAAGAAAGAGAGAAACA
TGATGAGAAAGAAGCTTTGCCATTGGGGCAAATAGAGAATGAGAAAGTAA
ACAAAACTTGCCAGCAACCCTCTAGGTACCACCCCTTCCTACTCCTAAAC
ATTTCTATTTGGTAGGAACTCTCTTCTACTTGCTGGTCCAGGTCATTGGT
TTGGGCCCTGCAGTGCCATAGTAGCAGAGGACACAGCTATATGCTGCTTG
CCTCTAGCCAGCCAAGTGACTGACATAGGTATGTGAGAATGCAGTTGTTT
GTTTGTTCTTTTTGTTTTTTAATTTCCTCCCCAAAGCAGTTGGAAGTAGA
CAGCAGTGGCAGAATGGGTGACATATTTCAGAANGTTTATTGGCTAGATA
TGGAGCCTAGGTGTATGGGGGCAGCAAAGATTTGGATTGTCTTGAAGGAA
AGATCCAAGTTAGCAAAAATGCTTTTGACTTTGGGTTTTTTTTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_a04.g1 MSMg01no488_a04.g1 CHROMAT_FILE:
MSMg01no488_a04.g1 PHD_FILE: MSMg01no488_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:48 2005
         (618 letters)



>mm_chr9_37675836_37676853
          Length = 1018

 Score = 1089 bits (563), Expect = 0.0
 Identities = 597/618 (96%), Gaps = 15/618 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaatgtcactgaaaccaagtgttgcccaagcagctttctgttcaacatcagaagaga 60
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaatgtcactgaaaccaagtgctgtccaagcagctttctgttcaacatcagaagaga 260

                                                                       
Query: 61  tcttgaggtagataaggatttgtcattgtactggctagcctggtcattcttgaagctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgaggtagataaggatttgtcattgtactggctagcctggtcattcttgaagctact 320

                                                                       
Query: 121 ggagaaaaaaagaaaagaaaagaaaagaaaagaaaagaagagaaaagaagagaagagaag 180
           |||||||||||||||||||||||||||||||||||               ||||||||||
Sbjct: 321 ggagaaaaaaagaaaagaaaagaaaagaaaagaaa---------------agaagagaag 365

                                                                       
Query: 181 agaaaagaaaagaaaaaagaaaaaagaaaagaaagagagaaacatgatgagaaagaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agaaaagaaaagaaaaaagaaaaaagaaaagaaagagagaaacatgatgagaaagaagct 425

                                                                       
Query: 241 ttgccattggggcaaatagagaatgagaaagtaaacaaaacttgccagcaaccctctagg 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 426 ttgccattggggcaaatagagaatgagaaagtaaacaaaacttaccagcaaccctctagg 485

                                                                       
Query: 301 taccaccccttcctactcctaaacatttctatttggtaggaactctcttctacttgctgg 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 486 taccaccccttcctactcctaaacatttttatttggtaggaactctcttctacttgctgg 545

                                                                       
Query: 361 tccaggtcattggtttgggccctgcagtgccatagtagcagaggacacagctatatgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tccaggtcattggtttgggccctgcagtgccatagtagcagaggacacagctatatgctg 605

                                                                       
Query: 421 cttgcctctagccagccaagtgactgacataggtatgtgagaatgcagttgtttgtttgt 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 606 cttgcctctagccagccaagtgactgacacaggtatgtgagaatgcagttgtttgtttgt 665

                                                                       
Query: 481 tctttttgttttttaatttcctccccaaagcagttggaagtagacagcagtggcagaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tctttttgttttttaatttcctccccaaagcagttggaagtagacagcagtggcagaatg 725

                                                                       
Query: 541 ggtgacatatttcagaangtttattggctagatatggagcctaggtgtatgggggcagca 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggtgacatatttcagaaggtttattggctagatatggagcctaggtgtatgggggcagca 785

                             
Query: 601 aagatttggattgtcttg 618
           ||||||||||||||||||
Sbjct: 786 aagatttggattgtcttg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)