BAC Information

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BAC

Clone NameMSMg01-488F11
Chromosome9 (Build37)
Map Location 28,114,904 - 28,115,502
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneIgsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488F11.T7 (MSMg01no488_f11.b1)MSMg01-488F11.TJ (MSMg01no488_f11.g1)
ACCAG567087AG567088
length639746
length of high quality
(start - end)
599 (41 - 639)272 (77 - 348)
definitionCHROMAT_FILE: MSMg01no488_f11.b1 PHD_FILE: MSMg01no488_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:14 2005CHROMAT_FILE: MSMg01no488_f11.g1 PHD_FILE: MSMg01no488_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCACGTCAGAGAGAGGATCCGCGGAATTCCAATTCCCCTTGAACTTG
GCAAGAACCTCTTGCTGATTCCAGAGTGCAGAGTTGTGCTGCTGTGCTGT
GCCCCAATGACCGCAATGCCTGTGATACATATTCTGTCACCCTTAGCAAC
AAGCCTCAAAGACAGTTTCATTGTGATGGCTTGGCTTGGGTCAGTGCTCC
AATGAGAACTGACAAGCTCACAGCTCTGTGCCCAGCTCCCGAGTGACCTA
TGTGGAGCCAAGAAGGCATCACTCCCCATTCTCCGAGTGTGGAGTAAGGC
TCAGCGGAGTCAGAAACCCTCTCTTACTACAGTCCTCACCACCACTGGGC
TTTGTTCTTACAGATGATACCTAAGAGTGATTGTGATCTCTGCGGGGAGA
GGAGACAAATGGTACCAGAGCAGCTCTGCCTGGCTTTGTTTCCTGAACAC
TTAGTCCTTGGCCTATGCATGTGGCTTTGTTGGCTTTTCACAAACCTGAG
AGAAAGCCCAGTCTTTGCATTGTCCTGTGTAGATATTAGAACTCACAGCT
GCAGATGGCCTAGCAAGCAAATGCCAGGCATTCTTGCACCCTCTGGGTGA
GAAGAACTTCCAGGACCTGATGCTGTTTGGGTGACAGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTATGTCTGTATTGATTTTCTG
CCTTTTGTTTCTGTCTATTCTGATGGAGTGGTCTTGAAATTCTCTACTGT
GATAATGGAGTTGTATGATTTATTTTCAGTTCTATGATTTTTTTTTCCTC
ATATATGCTGCCACTCTGATGTAGACACACCTCAAGAGTTGTTAATGACA
CATAATTTTGCATTAATCTTTTTATTTATTTTATTTAATTGTATGTGTTC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNAA
ANAAAATTTTTTTTTATTNATATTTTTTAAAAATTTTATTTTTTATTTTT
TTATTTTTTTTATACCCCCCATTCTATTTTATATTCTATACTTTCAACAC
ATTTTCTTTACTTACATTCCTTTTTTTTCTTTAATCTACATTAATCTAAT
TCATATTCTTCTCTAATTTCATTACTATCTTCCTTTTACCAACCTCACAT
ACTCTTTTTTAATAATTTCCCTTTTATTCTTTTTTATTTTTCATATTTTT
AACCATCTTCTCATATTATTACATTCTTCTCTCACTCTTTTTCCACACTT
TACTTTTTATATTTCTTTTTTTTTTTTTTTTTTCTCTTTACACTTTTCTT
TCCTATATTTTTCCTTTTTTACTTTTTTTTTATACCACCACTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_f11.b1 MSMg01no488_f11.b1 CHROMAT_FILE:
MSMg01no488_f11.b1 PHD_FILE: MSMg01no488_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:14 2005
         (599 letters)



>mm_chr9_28114704_28115702
          Length = 999

 Score = 1127 bits (583), Expect = 0.0
 Identities = 595/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaacttggcaagaacctcttgctgattccagagtgcagagttgtgctgctgtgctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cttgaacttggcaagaacctcttgctgattccagagtgcagagttgtgctgctgtgctgt 740

                                                                       
Query: 61  gccccaatgaccgcaatgcctgtgatacatattctgtcacccttagcaacaagcctcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gccccaatgaccgcaatgcctgtgatacatattctgtcacccttagcaacaagcctcaaa 680

                                                                       
Query: 121 gacagtttcattgtgatggcttggcttgggtcagtgctccaatgagaactgacaagctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gacagtttcattgtgatggcttggcttgggtcagtgctccaatgagaactgacaagctca 620

                                                                       
Query: 181 cagctctgtgcccagctcccgagtgacctatgtggagccaagaaggcatcactccccatt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagctctgtgcccagctcccaagtgacctatgtggagccaagaaggcatcactccccatt 560

                                                                       
Query: 241 ctccgagtgtggagtaaggctcagcggagtcagaaaccctctcttactacagtcctcacc 300
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 559 ctccgagtgtggagtaaggctcagcggagtcggaaaccctctcttcctacagtcctcacc 500

                                                                       
Query: 301 accactgggctttgttcttacagatgatacctaagagtgattgtgatctctgcggggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 accactgggctttgttcttacagatgatacctaagagtgattgtgatctctgcggggaga 440

                                                                       
Query: 361 ggagacaaatggtaccagagcagctctgcctggctttgtttcctgaacacttagtccttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggagacaaatggtaccagagcagctctgcctggctttgtttcctgaacacttagtccttg 380

                                                                       
Query: 421 gcctatgcatgtggctttgttggcttttcacaaacctgagagaaagcccagtctttgcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcctatgcatgtggctttgttggcttttcacaaacctgagagaaagcccagtctttgcat 320

                                                                       
Query: 481 tgtcctgtgtagatattagaactcacagctgcagatggcctagcaagcaaatgccaggca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtcctgtgtagatattagaactcacagctgcagatggcctagcaagcaaatgccaggca 260

                                                                      
Query: 541 ttcttgcaccctctgggtgagaagaacttccaggacctgatgctgtttgggtgacagat 599
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcttgtaccctctgggtgagaagaacttccaggacctgatgctgtttgggtgacagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)