BAC Information

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BAC

Clone NameMSMg01-488O04
Chromosome9 (Build37)
Map Location 7,280,943 - 7,281,133
singlet/doubletsinglet
Overlap geneMmp13
Upstream genePdgfd, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5
Downstream geneMmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488O04.T7 (MSMg01no488_o04.b1)MSMg01-488O04.TJ (MSMg01no488_o04.g1)
ACCAG567502AG567503
length762770
length of high quality
(start - end)
671 (80 - 750)191 (130 - 320)
definitionCHROMAT_FILE: MSMg01no488_o04.b1 PHD_FILE: MSMg01no488_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:55 2005CHROMAT_FILE: MSMg01no488_o04.g1 PHD_FILE: MSMg01no488_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGGGGCG
CGGAATTCCTGAATTTCTTCAGAGTGGGATCATGAATGGGTGTTGGATTT
TGTCAAATGCTTTCTCCGAAACTAAGGAAATGATCATGTTGTTTTTGTCT
TTGAGTTTGTTTATATAATAGATTAAGTTGATCGATTTCCGTATATTAAA
CCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTG
TTTTAATGTGTTCTCAGATTCAGTTAGCGAGAATTTTATTGAGTATTTTT
GCATGGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTCTTGG
ATCTTTCTGTGGTTTAGGTATCAGAGTAATTATGGGTTCATAGAATGAGT
GTTGGTATAGCACCTTCTACTTCTATTTTATGCAATAGTTTGTGAAGTAC
TAGAATTAGATCTTCTTTGAAGGTCTGAGAGAACTCTGCACTAAACCCAT
TTGGTCCAGGGCTTTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTA
TTTCTTTAGGGGATATGGGACAGTTTAGATCGTTAACTTGATCCTGATTT
AACTTTTGTACCTGGTATCTGTATATAAATTTGTCCATTTTGTCCAGGTT
TTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGATGTTTT
GGATTTTTTCAGGATCTGTTGTTATGACTCCCTTTTCATTTCTGATTTTG
TTAATTAGGATG
GGCCAGCGATGATAAGGGTAGGGCGGGGGGAGGCCTGTTTCACACAGGGG
AAGGGAAGTATAGAATTTCCAAAGAAAAGGCCTGGAATTGGCAACAAAGT
AGATGCTGTCTATGAGAAAAATGGTACCTAGTTACATTGCACTGATTTTA
TAAAAGGGCTTCTGGGCCCTCAGACGTTTTTCATATACAAAGAATTTTAA
TAAAGAATTCAAATGGCTTATATATGCATGCTCACTAAGGTATTGTTTCT
GTGTGATTACTTAGATAGCAAAAAAATAACCTGATTAGAATCAATGAGAA
TTTTACTTAATTACTACCAAGTTTGTTAATTTTAGAGCNGGAACCNCAGG
AAGACCNTAAATTATTTGTTAAAGTGTCAAGACGCAGAGGGTTATGGTCA
AAATTCAAATTAGGGGTGGGACCCCCCACTTTTTTTTTAAGAATTCTTAA
TTTTCACAACTATTACGGTAATTTTTGGTTTAATTACCAAGGGAATTATT
CTCTTAAATATGAACGTTTCACAACTAGACCTTTGAACTAGAAAGTTTAA
CTTCTTCGGATAACTTTATGGAAATCTTTGAGAAATTTTGCGACAATTTT
TTAAATACCCCGTTAAAACTGTATACTTACCCTAATCCTCCCCGGGCTCT
TTGAATTCCCCCATAAACCCTCCTCCTTTTTTTTCTTTCTTCGAATAGTG
CGGTTTTCTCCCCGATTTTCAAAGCTGTCACCCTCTCTTTCCCCTCCTTT
TCTATCGGCTCATCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_o04.g1 MSMg01no488_o04.g1 CHROMAT_FILE:
MSMg01no488_o04.g1 PHD_FILE: MSMg01no488_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:55 2005
         (191 letters)



>mm_chr9_7280743_7281333
          Length = 591

 Score =  362 bits (187), Expect = e-104
 Identities = 190/191 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttacattgcactgattttataaaagggcttctgggccctcagacgtttttcatataca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agttacattgcactgattttataaaagggcttctgggccctcagacgttttttatataca 260

                                                                       
Query: 61  aagaattttaataaagaattcaaatggcttatatatgcatgctcactaaggtattgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaattttaataaagaattcaaatggcttatatatgcatgctcactaaggtattgtttc 320

                                                                       
Query: 121 tgtgtgattacttagatagcaaaaaaataacctgattagaatcaatgagaattttactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgattacttagatagcaaaaaaataacctgattagaatcaatgagaattttactta 380

                      
Query: 181 attactaccaa 191
           |||||||||||
Sbjct: 381 attactaccaa 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)