Query= MSMg01no489_o20.b1 MSMg01no489_o20.b1 CHROMAT_FILE:
MSMg01no489_o20.b1 PHD_FILE: MSMg01no489_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:21 2005
(676 letters)
>mm_chr9_26575305_26576375
Length = 1071
Score = 1212 bits (627), Expect = 0.0
Identities = 646/655 (98%), Gaps = 5/655 (0%)
Strand = Plus / Minus
Query: 22 ggtatgaggctggaagaggtaacgatgattgagtctttaaaggagggccatggttcctgt 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ggtatgaggctggaagaggtaacgatgattgagtctttaaaggagggccatggttcctgt 812
Query: 82 tgcaggtattcctccacctcctccacctgagcttactgctaagatggtctatgagccaat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgcaggtattcctccacctcctccacctgagcttactgctaagatggtctatgagccaat 752
Query: 142 gagtccagctctctacctatcactgtgggatgctatccagtacatggataaggtaagtgc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gagtccagctctctacctatcactgtgggatgctatccagtacatggataaggtaagtgc 692
Query: 202 tataggctgggtatcagggatagctagtaagcagacaggacccaggagatatcccaacgg 261
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tataggctgggtgtcagggatagctagtaagcagacaggacccaggagatatcccaacgg 632
Query: 262 ggttctaggatgtgcaaagccactcagttgccttgaggtctctaccaaaccagagaactg 321
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggttctaggatgagcaaagccactcagttgccttgaggtctctaccaaaccagagaactg 572
Query: 322 agtgaagagaatacattggtactggcgtgggaattgggaatgactagggcagctttaacc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 571 agtgaagagaatacattggtactggcgtgggaattgggaatgactagggtagctttaacc 512
Query: 382 tggtgtctcccctcaagcctcaggggtagacatttccatgggtcatggatatggtgagga 441
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 511 tggtgtctcccctcaagcctcaggggtaggcatttccatgggtcatggatatggtgagga 452
Query: 442 gcagaggaaggtctgtggagaggaagaggaaacctgctatagttcattttgttgtgatgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcagaggaaggtctgtggagaggaagaggaaacctgctatagttcattttgttgtgatgc 392
Query: 502 tggcttcaggattgagtgacatgatggtggcttcaggattctgctagactgcaggactct 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tggcttcaggattgagtgacatgatggtggcttcaggattctgctagactgcaggactct 332
Query: 562 agtgaaatctcccctttccttttgtccttatttatgcctctgagaagtcattagtttaag 621
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agtgaaatctcc-----ccttttgtccttatttatgcctctgagaagtcattagtttaag 277
Query: 622 ctagtaagaaggtggaatagagaagaagaggttagagcatccttgcatcctgtcc 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctagtaagaaggtggaatagagaagaagaggttagagcatccttgcatcctgtcc 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1071
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1061
Effective search space: 706626
Effective search space used: 706626
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_o20.g1 MSMg01no489_o20.g1 CHROMAT_FILE:
MSMg01no489_o20.g1 PHD_FILE: MSMg01no489_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:21 2005
(577 letters)
>mm_chr9_26475570_26476546
Length = 977
Score = 656 bits (339), Expect = 0.0
Identities = 566/767 (73%), Gaps = 190/767 (24%)
Strand = Plus / Plus
Query: 1 ctcccctgctcttctccctacccaatcccagttcccggtgggcactctgccaggagacca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11 ctcccctgctcttctccctacccaatcccagttcccagtgggcactctgccaggagacca 70
Query: 61 catcaccagcaggctgttaaccttggcaatgaaaagcacagctttatgagcgcaagaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 catcaccagcaggctgttaaccttggcaatgaaaagcacagctttatgagcgcaagaaat 130
Query: 121 tggctaaagtcattaattttgctcataatagaaaattaattcttgaaatgaggaagccag 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 131 tggctaaagtcattaattttgctcataatagaaaattaatttttgaaatgaggaagccag 190
Query: 181 cagcagcatagactgctagtttcatccacaggggaatcacagtgaccccctgcctccgag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 191 cagcagcatagactgctagtttcatccacaggggaatcacagtgaccccctggctccgag 250
Query: 241 ggatatttccctctgttccattgcagcagaaccatcttttaaatgtggctttattgtgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggatatttccctctgttccattgcagcagaaccatcttttaaatgtggctttattgtgag 310
Query: 301 ggaatgtagaagtgttgtcttcttccttcatggtttctctttttgttaagaagaagg--- 357
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 311 ggaatgtagaagcattgtcttcttccttcatggtttctctttttcttaagaagaaggcag 370
Query: 357 ------------------------------------------------------------ 357
Sbjct: 371 ggccattggacttgcaaactttatatgccccagtacaggggaaagccagggccaaaaagt 430
Query: 358 -------------taggg------------------------------------------ 362
|||||
Sbjct: 431 gggagtgggtgagtaggggagttgggggggggagggtatgggggactgttgggatagcat 490
Query: 362 ------------------------------------------------------------ 362
Sbjct: 491 tggaaatgtaaatgaggaaaatacctaataaaaaatatttaaaaaaaaaagaaaaagaag 550
Query: 363 ------------ccaacagaatccatagtgtgcatgcccacattctctggcccccataac 410
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagaaggcagggccaacagaacccatagtgtgcatgcccacattctctggcccccataac 610
Query: 411 attagacaggaagagatggggtgccacggttatgcttaagtaactaaaaggctgttatcc 470
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 611 attagacaggaagagatggggtgctacggttatgcttaagtaactaaaaggctgttatcc 670
Query: 471 tatcttccaaggcactttccacaagccaaggaggtgctctttttcctgctgttctagccc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 671 tatcttccaaggcactttccacaagccaaggaggtgctctttttcctgctgttttagccc 730
Query: 531 acaaggcagcatgtggttcatggaaagtggggtggagaaaataggaa 577
||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 731 acaaggcagcatgtggttcatgggaagtgggatggagaaaataggaa 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
