Query= MSMg01no491_a12.b1 MSMg01no491_a12.b1 CHROMAT_FILE:
MSMg01no491_a12.b1 PHD_FILE: MSMg01no491_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:48 2005
(329 letters)
>mm_chr9_55410180_55410908
Length = 729
Score = 636 bits (329), Expect = 0.0
Identities = 329/329 (100%)
Strand = Plus / Minus
Query: 1 gttgttaactactaaaaggcaagccccttttgttttcacagagacttccaacagaggatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gttgttaactactaaaaggcaagccccttttgttttcacagagacttccaacagaggatg 294
Query: 61 agccttgctgattgctggggaaatcaggatagaaaacctaaggagcaagattctcagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agccttgctgattgctggggaaatcaggatagaaaacctaaggagcaagattctcagagg 234
Query: 121 cagctacttatttaaaatgcaaatcacagcatgggagagatgctcagcaattgataacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cagctacttatttaaaatgcaaatcacagcatgggagagatgctcagcaattgataacac 174
Query: 181 tagctgttctttcagaggacccaggttcaatgcctatcactccaggcccaggggattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tagctgttctttcagaggacccaggttcaatgcctatcactccaggcccaggggattgga 114
Query: 241 cacctccttttggcctctgccagcaccagccacacatgaacatatgtggaggcaaaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cacctccttttggcctctgccagcaccagccacacatgaacatatgtggaggcaaaaaac 54
Query: 301 tcatacacataaaataacaatatgtgcat 329
|||||||||||||||||||||||||||||
Sbjct: 53 tcatacacataaaataacaatatgtgcat 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_a12.g1 MSMg01no491_a12.g1 CHROMAT_FILE:
MSMg01no491_a12.g1 PHD_FILE: MSMg01no491_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:48 2005
(302 letters)
>mm_chr9_55281675_55282376
Length = 702
Score = 518 bits (268), Expect = e-151
Identities = 286/296 (96%), Gaps = 8/296 (2%)
Strand = Plus / Plus
Query: 7 ttggcaggatataggccgctttagggagatggattatgccagttttagaaggattagcac 66
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttggcagggtataggccgctttagggagatggattatgccagttttagaaggattagcac 266
Query: 67 gttaagcagtcacagcctggtcaggccagagctgagggttacagtcgcaatgggttcatc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttaagcagtcacagcctggtcaggccagagctgagggttacagtcgcaatgggttcatc 326
Query: 127 ctggttgccatgtgcaggagaggtggaggctctgtaaatccttgtacattagacatttat 186
||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 327 ctggttgccatgtgcaggagaggtggaggctct-------ct-gtacattagacatttat 378
Query: 187 ttccccatgagataaaagcccctgctcctctgaatggtgggtgctccccagcccttgact 246
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 379 ttccccatgagataaaagcccctgcttctctgaatggtgggtgctccccagcccttgact 438
Query: 247 gtgctcctgaggtgggaactcctgcttactctaatacctggcagagagctgggccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgctcctgaggtgggaactcctgcttactctaatacctggcagagagctgggccc 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
