BAC Information

Click to search

BAC

Clone NameMSMg01-492C09
Chromosome9 (Build37)
Map Location 28,563,069 - 28,563,454
singlet/doubletsinglet
Overlap geneOpcml
Upstream genenone
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C09.T7 (MSMg01no492_c09.b1)MSMg01-492C09.TJ (MSMg01no492_c09.g1)
ACCAG569973AG569974
length7061,056
length of high quality
(start - end)
387 (317 - 703)---
definitionCHROMAT_FILE: MSMg01no492_c09.b1 PHD_FILE: MSMg01no492_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:17 2005CHROMAT_FILE: MSMg01no492_c09.g1 PHD_FILE: MSMg01no492_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTATAATTTGGCGGCGCTAAACGACTCACTTATTCGAGAGGACCGCGG
AATTCACTGCTTTCGCTTGAGCTACAATCTACTTGATGTTTGTCTCTTTC
CCTGGCTCTTGCCTGGGAATTGGGTAATATAGCTAAAAGTCCCTTTTCTC
ACACTTATATACATATTTTTGGTAGCTAATCCTCATTCTGGAATTTCCAA
GTGGCTATTATTCACCAATAATTGCCATACAAAAGGTACATTACTTTTAA
GATTATAAGACAGACTAAAGCAATCTGTCTTACAGTATCAGACATGCTGA
TAAGATACCTTCTAGTATATTATTCCATTTTTGAATGTCATTTAAGAATG
TTACTCTAAGGAGAAAAAAGTCACAAGTCTATATGATGGCAAATAACTAT
AGGGTCACAACTGTTTATTATAAGCTGAGTTTTTCAAACATACCATATTA
TAAAATATGTAGCCCTATAGTAATACATCTAAAAATTCTAACACAGACAT
AAGAGGATACAAGAAAGCCACAAAATAATGTGACACAAAGTCTAATACAT
TATAATTGTGCTTCTTCTTTAGTTCACTAATTGAGAGGCTGTGAGCAGCT
ATTGAAGGATAAGTGAGTTGAATTTTATGTGGATAAACCTGTTTATCTAA
TCCACAGCCAAGTGCCGGGATTATAAATGGGTGCTGCAGTGCCTGATGGT
TATGTA
CAATGACATTGGGTATGTCTTGAGGGGACGCCTTGTCTGCTGACATATGA
GGGTGAAACTACANTATATTATCCCCAGAGAAGTCCCAGGACAAACCCAC
GTTTACACAAGAAGAAATCTCTTGTTTTTACTAATACTGATACATAATAA
AAAAACCATACCCTATCTAAAATAACATATCACCTAATCACCCATACCAA
TATAATAATCTTCTAATTGCCTTGAATAATACCTAATTCTCTCTCACTCT
CACTTACAACTTGCCATACTCCTTTTAATTCCTTGCCACTACTAAATGGT
CCTTTCCATAAGAAGGCTTTAACACCCAACTTCCTATTTAACAACTACGC
TCGAAGGGCATAAATGGAGGTTCTTAAATGATTATGGTCTCCTAACGGGC
GCCTAAGCAGCGTGTAATTTTTATATAACACTCCATGGTACCTCTCCCTC
ATTGACCTTAAGCAACCTCCCTAAACCTCCTTGGCTATTTTAAATACCCC
TTACCTCCTCTCCACCTCTTGGAATGCAATCAGCTTGCCTCTCGTGTCAC
AATCTTTGTACTGGCTACATGGTCTCTTGCGCCTGGAATCCCAAACTAAA
CATGGAATTATGTCCCCCCACGGCTGCAGCAAGCTTCGTTCTTTTGCTTG
TGCCGCTTTTATAATAATTTGGCGTGCTTCATCTACTTACAACAATACTC
CTATGGTTCTTGGCTGTCCCACCCCTGGCTCTCTGTTTTACGCCCATATT
TGGACGTTGACCTCTTTCCATCCTCTTCCGGTTGATCCTACCACTTCTCT
ATTTCCCCTCTGTTAACAAAATGAAATCTCTTTTGGTTCAATCTCAACCT
TATTGCTTCTGCCTGTCTTCTCCCTATGTTATAATGTTTTCCATTTACTA
CGCCTCCTTTTCCCTATACCACTCGCTTCCCGTTCTCTCATGTTAGTTTC
CGCGCCTCCTATCCACCTCTGTGCTTCTCTCTTATTCTCATGCCACTTAA
CTCCTCTATTACCTTCCATTTGCTTTTCCATTCCCCCTTGTCCCCTTATT
CTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c09.b1 MSMg01no492_c09.b1 CHROMAT_FILE:
MSMg01no492_c09.b1 PHD_FILE: MSMg01no492_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:17 2005
         (387 letters)



>mm_chr9_28562869_28563654
          Length = 786

 Score =  700 bits (362), Expect = 0.0
 Identities = 381/388 (98%), Gaps = 3/388 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattattccatttttgaatgtcatttaagaatgttactctaaggag-aaaaaagtcaca 59
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 586 atattattccatttttgaatgtcatctaagaatgttactctaaggagaaaaaaagtcaca 527

                                                                       
Query: 60  agtctatatgatggcaaataactatagggtcacaactgtttattataagctgagtttttc 119
           |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||
Sbjct: 526 agtctatatgatggcaaataactatagggtcacaactgtttat--taagatgagtttttc 469

                                                                       
Query: 120 aaacataccatattataaaatatgtagccctatagtaatacatctaaaaattctaacaca 179
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 468 aaacataccatattataaaatatgtagccctatagtaattcatctaaaaattctaacaca 409

                                                                       
Query: 180 gacataagaggatacaagaaagccacaaaataatgtgacacaaagtctaatacattataa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gacataagaggatacaagaaagccacaaaataatgtgacacaaagtctaatacattataa 349

                                                                       
Query: 240 ttgtgcttcttctttagttcactaattgagaggctgtgagcagctattgaaggataagtg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 348 ttgtgcttcttctttagttcactaattgagaggctgtgagcagctattgaaggataaggg 289

                                                                       
Query: 300 agttgaattttatgtggataaacctgtttatctaatccacagccaagtgccgggattata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agttgaattttatgtggataaacctgtttatctaatccacagccaagtgccgggattata 229

                                       
Query: 360 aatgggtgctgcagtgcctgatggttat 387
           ||||||||||||||||||||||||||||
Sbjct: 228 aatgggtgctgcagtgcctgatggttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space:   293706
Effective search space used:   293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)