Query= MSMg01no492_d05.b1 MSMg01no492_d05.b1 CHROMAT_FILE:
MSMg01no492_d05.b1 PHD_FILE: MSMg01no492_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:21 2005
(572 letters)
>mm_chr9_42822977_42823948
Length = 972
Score = 1075 bits (556), Expect = 0.0
Identities = 568/574 (98%), Gaps = 5/574 (0%)
Strand = Plus / Plus
Query: 1 ggggtaccctctgactcacagagatcctgctgcctttgccttccaagtactaagattaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggggtaccctctgactcacagagatcctgctgcctttgccttccaagtactaagattaaa 261
Query: 61 gtttatgtgctacaatacttagcttggtttagcttttagtattcatgaaactatagttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtttatgtgctacaatacttagcttggtttagcttttagtattcatgaaactatagttct 321
Query: 121 acatcattttcaacctaacatgtttttggtttggttcagtttagtttggtttggtttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatcattttcaacctaacatgtttttggtttggttcagtttagtttggtttggtttttt 381
Query: 181 tgagacagggtttctctgtgtagctctggctgtcctgaaactcattctgtaaaccaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgagacagggtttctctgtgtagctctggctgtcctgaaactcattctgtaaaccaggct 441
Query: 241 ggccttgaattcttta--aatccacttgcatctgcctcccaagtgctgggattaaaggcg 298
||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggccttgaactc---agaaatccacttgcatctgcctcccaagtgctgggattaaaggcg 498
Query: 299 tgtgccaccactgcctggatgaacctaacatgtttttatgaacaaatacatccatctggt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgccaccactgcctggatgaacctaacatgtttttatgaacaaatacatccatctggt 558
Query: 359 agtctctgtgtgaatcaggacagaactgtcagtaaaaccaggctagtaactaagtctaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtctctgtgtgaatcaggacagaactgtcagtaaaaccaggctagtaactaagtctaac 618
Query: 419 aggataaaggctgcttctctttgtaatggcaaagtgcctcatgattcaagactgagtcat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggataaaggctgcttctctttgtaatggcaaagtgcctcatgattcaagactgagtcat 678
Query: 479 tctggccacaattggaatattaacatgcttttaaagacaccaacagttggcctctcattt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctggccacaattggaatattaacatgcttttaaagacaccaacagttggcctctcattt 738
Query: 539 gagctaaaaagcacaagtatttgcctctctatct 572
||||||||||||||||||||||||||||||||||
Sbjct: 739 gagctaaaaagcacaagtatttgcctctctatct 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_d05.g1 MSMg01no492_d05.g1 CHROMAT_FILE:
MSMg01no492_d05.g1 PHD_FILE: MSMg01no492_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:22 2005
(375 letters)
>mm_chr9_43001282_43002056
Length = 775
Score = 630 bits (326), Expect = 0.0
Identities = 355/372 (95%), Gaps = 12/372 (3%)
Strand = Plus / Minus
Query: 4 ccttatgcttatgtagcaagagcactgtaccaagccgtctatctgtctgtctgtctgtct 63
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 775 ccttatgcttatgtagcaagagcactgtaccaagcc------------gtctgtctgtct 728
Query: 64 gtctgtctgtctgttcttgagaaactcatggagctcagctggatcccattacagatggtc 123
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 727 gtctgtctgtctgttcttgagaaactcatggagctcagatggatcccattacagatggtc 668
Query: 124 atgagccaccatgatgtggttgctgggatttgaactcaggacctctggtagagcagtcgg 183
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 667 gtgagccaccatgatgtggttgctgggaattgaactcaggacctctggtagagcagtcgg 608
Query: 184 tgctcttaaccgctgagccatctctccagccctccttttctcttctcaaccaagcatttg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 607 tgctcttaaccgctgagccatctctccagccctccttttctcttctcaaccaagcagttg 548
Query: 244 tataaaaatataactttattcatgcattaaaagtccccaggctgtaactgacagatccca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gataaaaatataactttattcatgcattaaaagtccccaggctgtaactgacagatccca 488
Query: 304 acaccaaagcagctgaccttgggggttttaggctgtgctgatcacttgtggcctcaaaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acaccaaagcagctgaccttgggggttttaggctgtgctgatcacttgtggcctcaaaca 428
Query: 364 ctagagaaaaga 375
||||||||||||
Sbjct: 427 ctagagaaaaga 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
