BAC Information

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BAC

Clone NameMSMg01-492G14
Chromosome9 (Build37)
Map Location 81,765,612 - 81,765,864
singlet/doubletsinglet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492G14.T7 (MSMg01no492_g14.b1)MSMg01-492G14.TJ (MSMg01no492_g14.g1)
ACCAG570173AG570174
length713744
length of high quality
(start - end)
253 (325 - 577)48 (261 - 308)
definitionCHROMAT_FILE: MSMg01no492_g14.b1 PHD_FILE: MSMg01no492_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:38 2005CHROMAT_FILE: MSMg01no492_g14.g1 PHD_FILE: MSMg01no492_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCCTTATCTCATTTCTGATTAGATTGCTTTCACCTTGGCAGAACT
CTGGACAATAAACCCTCTTATATTTAACATATGCTTTAGTTTAGTTGTAA
TGAATAGAATAATAGAACAGCTTATTAGAAACTGATTTTGATGGTTGGTG
AGAGAGATGTAACATTCTTAATCTTTAGTATGGTAGAGCATGTATTTAAA
AGGCCTCTTCTTTTCCTGTGTCATCCTGCTTACAGGAATACCTGTCATTG
CAAGATGAATTTTCTCATCCAAACCTTACTTCACACCCCACAGTGGTGAC
TGTTTAATCCTTCTCAGAACAATGGCAGGATAAACGTACTGTTCCTTCTT
CACTAATAGCATCCCTGACCAGAGGCTTATCGTCCATTTTCTGTTTGTAA
TTTGTTTATTTTCTTATTCTACTAATTCTATTGTCTCCTCTTCACATTAA
AAGCCCAGAGGGAAGGAACGTCTGTGTCTCTATAGTGTCTGGTACAACCA
ATTACTGATTCTGAATGCTTACTGACAATATAAGACTGTTTAATATTCTG
CTTTTCTATAACAGTGCATACAATATTTAACATAGTTATGGAAACATTAC
TGCTTCCCAGAACTGTATTTGTCTGATAGCTATATCCTAAATAATCCATT
ATTATGCAAGTTT
ATGCTTTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGCCAGGATCCATTGCCTTAAAAGATAGACC
TTCCTGTTCTATACTGTATAGAAAAGAGATAGCCAAAGGAACAAAAAGAA
AGCTAGAGTCTTTGGCTACAGTAATTGCAGAAAGAAAACCAATTAAACAA
ATAGGAAAGAAAGAATAAGAAAAGATAATATAAACTTGACGCTTAGTTCG
TAGCTTGTATGTCTGTGTTTCACTGCATAACATGAAAACACAGCAGCTCA
TTAACAATGGGATAATTCACGTCTGGCACCACGGACACATATTGGTACAG
CCTGGCATTCTGAGACACATAGTATTCCGCCATACAAACTATTAATACAC
ATCTCATTTTCACTGCTACAAAAGTAGGATATGGCGGTGGCGGAGCGTCG
GTATTGTTCAGACAGAAAAACTAAGTCCAAGACTATGGCCGTACAATCTA
AATTGCAAATTAAACGTTCCCTGAATATTATATATCATTCAGTTTGAACT
CCTCCGTGCCAGGTCTTCGTTGGTCCCTAACAATACAGCATTATTCGACT
CAAAATCAGTCCTTCCTCCTACGAGAAAGGATATTCATTCCATTTTATTT
TAACACACAATTGTTCTCCTGTTCCCCCGAAATACATTAACTGGGTGGAA
GTTTGCCCCCTTGACCTTTATGCGGTTGCCTATCCCATTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_g14.b1 MSMg01no492_g14.b1 CHROMAT_FILE:
MSMg01no492_g14.b1 PHD_FILE: MSMg01no492_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:38 2005
         (253 letters)



>mm_chr9_81765412_81766064
          Length = 653

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacttcacaccccacagtggtgactgtttaatccttctcagaacaatggcaggataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttacttcacaccccacagtggtgactgtttaatccttctcagaacaatggcaggataaa 260

                                                                       
Query: 61  cgtactgttccttcttcactaatagcatccctgaccagaggcttatcgtccattttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtactgttccttcttcactaatagcatccctgaccagaggcttatcgtccattttctgt 320

                                                                       
Query: 121 ttgtaatttgtttattttcttattctactaattctattgtctcctcttcacattaaaagc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttgtaatttgtttattttcttattctactaattctattgtctcctcttcagattaaaagc 380

                                                                       
Query: 181 ccagagggaaggaacgtctgtgtctctatagtgtctggtacaaccaattactgattctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagagggaaggaacgtctgtgtctctatagtgtctggtacaaccaattactgattctga 440

                        
Query: 241 atgcttactgaca 253
           |||||||||||||
Sbjct: 441 atgcttactgaca 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)