BAC Information

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BAC

Clone NameMSMg01-492N01
Chromosome9 (Build37)
Map Location 99,899,945 - 99,900,588
singlet/doubletsinglet
Overlap genenone
Upstream geneFaim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456
Downstream gene4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492N01.T7 (MSMg01no492_n01.b1)MSMg01-492N01.TJ (MSMg01no492_n01.g1)
ACCAG570481AG570482
length713715
length of high quality
(start - end)
174 (71 - 244)637 (79 - 715)
definitionCHROMAT_FILE: MSMg01no492_n01.b1 PHD_FILE: MSMg01no492_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:08 2005CHROMAT_FILE: MSMg01no492_n01.g1 PHD_FILE: MSMg01no492_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCCG
CGGAATTCTTTCNCTGCTGTAAAATAAAGCCCAGTGACACACTTGCTCCA
ACAAGGCCACAGCTCCTAATAGTGCTACTCTCTGGGCCAAGCATACTCAA
ACTACCACAGTAATATATTGATTTGTTTTTAATGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGCATGCACAAGCGTGCACATGAATGTGATGCAGCTTAAT
TTAGAAGCTATCTCCAACTGGTAGCCTCTTACAGAGGAAAACAAATGAAA
TAAAGAACCAGACATTTTTTATTATAACTAGAATCAAGAGATATGTTTAC
TAGAATCAAGGATATAATAAACAAGGTGTTTTCTTCTAAGAGAGTTGAAG
ATTATTATAATGAACAGTAGCAAACAAAATTTATAGAATTTTGAAAAAGA
AAGAGCCAAAGAAGTCACCCATCTGGGCTGAACATCATCAATAGTTTATG
GATCTGACAGATTCAGTGGATTGGAGGAAAGGTGAGAAAACAACAGAGGA
GAACGGGAAAAAATAAGAATGCAGCAGAGAGTACCAGAGAAGCATGAAAC
ACAGTGCAGGCTTTAAAGAGAGGGTCAAGAGAGCGGTATGTCTACAATCA
GAGGGTACAGGATACTAACTGTGAATCACACTGATTGCAGTGTTAAGATG
GGTCGAGGGCCCC
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGTACCAATGCAATTTTTA
AGTTTCATGAGTAAGAGAATCCATCTCTCAAGTACACAATCAGAAAAATA
GACATAGAAAAGCAAATCTTGCTCGCATCGGGCTTTTGTGTGAAATACCA
AACACCAAGAAACAAGAAGGCAGAACCTGGAATGCTTTGAGAGGATGCGA
CTAGAGGGATTTCTAAATCCTCCAAATGAGAAGGCATCAGGATAGGATTC
TTAAGCTCCGTCCTGAAGCATCCTCAACCCTGCCTTAGTGGTTAAAGCAT
TTGCCAAGCAAGTGTGAGGTCTGGAAATGGGTTGCCTGTGATTTCAGCAT
TCGGTGTGGAGATAGGGTATCTCCAGAACAAGATGGCTGCATTGGTGAGC
TTCTGGTCCACTGAGAGATCATTTCTTGATAAATAAAGTAGAGAGCAATT
GAAAAAAACCCTCATATGAACCTTGGACTTCCTCATGAATATGTCCCTGC
ATGCACACTCACACACATGTGCCACCACATGCATTCAAACACACACACAC
ACACACACACACACACACACACACACACACACAAAGAGAGAGAGAGAGAG
AGAGAGAGAGATATTCTTTAACCAGAAACTCACATATCCTATAAAAAAGT
ATCATGTAAGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_n01.g1 MSMg01no492_n01.g1 CHROMAT_FILE:
MSMg01no492_n01.g1 PHD_FILE: MSMg01no492_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:09 2005
         (637 letters)



>mm_chr9_99899745_99900780
          Length = 1036

 Score = 1170 bits (605), Expect = 0.0
 Identities = 632/645 (97%), Gaps = 9/645 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagtaccaatgcaatttttaagtttcatgagtaagagaatccatctctcaagtacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagtaccaatgcaatttttaagtttcatgagtaagagaatccatctctcaagtacaca 260

                                                                       
Query: 61  atcagaaaaatagacatagaaaagcaaatcttgctcgcatcgggcttttgtgtgaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagaaaaatagacatagaaaagcaaatcttgctcgcatcgggcttttgtgtgaaatac 320

                                                                       
Query: 121 caaacaccaagaaacaagaaggcagaacctggaatgctttgagaggatgcgactagaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaccaagaaacaagaaggcagaacctggaatgctttgagaggatgcgactagaggg 380

                                                                       
Query: 181 atttctaaatcctccaaatgagaaggcatcaggataggattcttaagctccgtcctgaag 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctaaatcctccaaatgagaag-catcaggataggattcttaagctccgtcctgaag 439

                                                                       
Query: 241 catcctcaaccctgccttagtggttaaagcatttgccaagcaagtgtgaggtctggaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catcctcaaccctgccttagtggttaaagcatttgccaagcaagtgtgaggtctggaaat 499

                                                                       
Query: 301 gggttgcctgtgatttcagcattcggtgtggagatagggtatctccagaacaagatggct 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggttgcctgtgatttcagcactcggtgtggagatagggtatctccagaacaagatggct 559

                                                                       
Query: 361 gcattggtgagcttctggtccactgagagatcatttcttgataaataaagtagagagcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcattggtgagcttctggtccactgagagatcatttcttgataaataaagtagagagcaa 619

                                                                       
Query: 421 ttgaaaaaaaccctcatatgaaccttggacttcctcatgaatatgtccctgcatgcacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgaaaaaaaccctcatatgaaccttggacttcctcatgaatatgtccctgcatgcacac 679

                                                                       
Query: 481 tcacacacatgtgccaccacatgcattcaaacacacacacacacacacacacacacacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcacacacatgtgccaccacatgcattcaaacacacacacacacacacacacacacacac 739

                                                                       
Query: 541 acacacacacacaca-a-------agagagagagagagagagagagagagatattcttta 592
           ||||||||||| | | |       ||||||||||||||||||||||||||| ||||||||
Sbjct: 740 acacacacacagagagagagagagagagagagagagagagagagagagagagattcttta 799

                                                        
Query: 593 accagaaactcacatatcctataaaaaagtatcatgtaagaagtg 637
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 accagaaactcacatatcctataaaaaagtatcatgtaagaagtg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space:   643302
Effective search space used:   643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)