BAC Information

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BAC

Clone NameMSMg01-495B03
Chromosome9 (Build37)
Map Location 33,089,520 - 33,090,059
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495B03.T7 (MSMg01no495_b03.b1)MSMg01-495B03.TJ (MSMg01no495_b03.g1)
ACCAG572201AG572202
length711745
length of high quality
(start - end)
622 (55 - 676)613 (77 - 689)
definitionCHROMAT_FILE: MSMg01no495_b03.b1 PHD_FILE: MSMg01no495_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:04 2005CHROMAT_FILE: MSMg01no495_b03.g1 PHD_FILE: MSMg01no495_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTNNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACCAAGTATTTTAGGCTGGCTGACCAGTGAGCCTCA
GGGACCCACCTGTCACTACATCCCCATTGCTATTACAAATATGTGCAAAC
CATGCTTAGCTTTTATTGAGTGGGGTGTGATAAAACTCCAGTTATCCTTT
TTGCTAGACAAAGCTTTAGAAACTGAGCCTTCTCTGAAGCTCAGCTTTAT
TTATTTAATAAAGGATTAAATCATAGCTATGGGCAGGATTCTGAACTGAT
TGTTGTTGTTGTTGTTGCTGCTGCTGCTGTTGTTGTGGGTATCAACTATT
GTATAAATGGACATCACTGCACAATCTGTGTTGTAATTCCTATCACTATG
AGAAAATAACCAAGATAAACCATTTATTAGGAAAATGGTGGCTCTTGACT
TCAGAGACTGCAATCCATGTTCAGATGGCTCACTGCTTTAGTATCTAAGG
CTAGGTCAGAACACCATGGCTGGGACTGAATGGCAGGGGACTGTTTGAAT
CATGGCAGATAGAGAGCAAAGAAAAAGAGAAAAAAGGACTGAAGTCCTAA
AGCCCCCAATGACATAAATGCCTCAAATTAGGCCATCTCCTTCTAAAATT
TCTCCTCCTAATTACAACATCCCAGGGACCAAGGTTTCACCAGACATGGA
TCTCTGGGAAA
NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACATCATTCAGAATGGCTAAGA
TAAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATATAGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGTGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGAT
CCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAA
GAAGGACACATGCTCCACTAAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCTCCTCAACAGAGGAATGGATACAGAAAATATGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGAAGGGCATCATCCTGAGTGAGGG
AAGCCAATCACAAAGGAACTCACACAATGTGTACTTACTGATAAGTGGAT
ATTAGCCCAGAAATTTAGGATACCCAAGATATAAGATACAATTTGCTAAA
CGCATGAAAATCAAGAAGAACGAAGACCAAAGTGTGGACACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_b03.b1 MSMg01no495_b03.b1 CHROMAT_FILE:
MSMg01no495_b03.b1 PHD_FILE: MSMg01no495_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:04 2005
         (622 letters)



>mm_chr9_33089038_33090059
          Length = 1022

 Score = 1036 bits (536), Expect = 0.0
 Identities = 539/540 (99%)
 Strand = Plus / Minus

                                                                        
Query: 83   aaatatgtgcaaaccatgcttagcttttattgagtggggtgtgataaaactccagttatc 142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 aaatatgtgcaaaccatgcttagcttttattgagtggggtgtgataaaactccagttatc 963

                                                                        
Query: 143  ctttttgctagacaaagctttagaaactgagccttctctgaagctcagctttatttattt 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  ctttttgctagacaaagctttagaaactgagccttctctgaagctcagctttatttattt 903

                                                                        
Query: 203  aataaaggattaaatcatagctatgggcaggattctgaactgattgttgttgttgttgtt 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  aataaaggattaaatcatagctatgggcaggattctgaactgattgttgttgttgttgtt 843

                                                                        
Query: 263  gctgctgctgctgttgttgtgggtatcaactattgtataaatggacatcactgcacaatc 322
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  gctgctgctgttgttgttgtgggtatcaactattgtataaatggacatcactgcacaatc 783

                                                                        
Query: 323  tgtgttgtaattcctatcactatgagaaaataaccaagataaaccatttattaggaaaat 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  tgtgttgtaattcctatcactatgagaaaataaccaagataaaccatttattaggaaaat 723

                                                                        
Query: 383  ggtggctcttgacttcagagactgcaatccatgttcagatggctcactgctttagtatct 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  ggtggctcttgacttcagagactgcaatccatgttcagatggctcactgctttagtatct 663

                                                                        
Query: 443  aaggctaggtcagaacaccatggctgggactgaatggcaggggactgtttgaatcatggc 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  aaggctaggtcagaacaccatggctgggactgaatggcaggggactgtttgaatcatggc 603

                                                                        
Query: 503  agatagagagcaaagaaaaagagaaaaaaggactgaagtcctaaagcccccaatgacata 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  agatagagagcaaagaaaaagagaaaaaaggactgaagtcctaaagcccccaatgacata 543

                                                                        
Query: 563  aatgcctcaaattaggccatctccttctaaaatttctcctcctaattacaacatcccagg 622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aatgcctcaaattaggccatctccttctaaaatttctcctcctaattacaacatcccagg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)