Query= MSMg01no496_n12.b1 MSMg01no496_n12.b1 CHROMAT_FILE:
MSMg01no496_n12.b1 PHD_FILE: MSMg01no496_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:19 2005
(184 letters)
>mm_chr9_14139475_14140059
Length = 585
Score = 319 bits (165), Expect = 6e-92
Identities = 180/187 (96%), Gaps = 5/187 (2%)
Strand = Plus / Minus
Query: 1 tcctcgatgccaggagctgagatactaccacagagcttgtaatacatatcacagggcacc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctcgatgccaggagctgagacactaccacagagcttgtaatacatatcacagggcacc 326
Query: 61 tgccgctcactagcatgccagcatgaactggctgatctacctcaacacttactcttattg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgccgctcactggcatgccagcatgaactggctgatctacctcaacacttactcttattg 266
Query: 121 cttgtctttcccttttctccaacatgtagtgtgagg---aggtgtggcagcnnagtccca 177
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 265 cttgtctttcccttttctccaacatgtagtgtgaggagcaggtgtggcagc--agtccca 208
Query: 178 agaaggc 184
|||||||
Sbjct: 207 agaaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 585
Length adjustment: 8
Effective length of query: 176
Effective length of database: 577
Effective search space: 101552
Effective search space used: 101552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no496_n12.g1 MSMg01no496_n12.g1 CHROMAT_FILE:
MSMg01no496_n12.g1 PHD_FILE: MSMg01no496_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:19 2005
(358 letters)
>mm_chr9_13962005_13962762
Length = 758
Score = 654 bits (338), Expect = 0.0
Identities = 353/358 (98%)
Strand = Plus / Plus
Query: 1 acagtagcagacatggacactgtggaaaagagaacaaagccaacagtgccacaatgagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtagcagacatggacactgtggaaaagagaacaaagccaacagtgccacaatgagaa 260
Query: 61 atcccaccaaagacatgagataggaaagctgggagacgagcaggagaagctgggaaatga 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 atcccaccaaagacatgagataggaaagttgggagacgagcaggagaagctgggaaatga 320
Query: 121 tactggcattaatgccaatactgagaactaacaaaaggcttgtccgttcacaaagagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactggcattaatgccaatactgagaactaacaaaaggcttgtccgttcacaaagagctt 380
Query: 181 taacacacatcaggtcagtgacttaaccacagcacccaggatgggtgtcagaagggcctt 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 taacacacatcaggtcagtgacttaatcacagcacccaggatgggtgtcagaagggcctt 440
Query: 241 ttcctaacaatggcacctcagggagatcagctcccttgctagacaacatctgactaaacc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ttcctaacaatggcacctcagggagatcagttcccttgctagacaacatctgactaaacc 500
Query: 301 agaactttgtgcttccttccccaatccaggacccagaacaagggacaggctgcctggt 358
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 501 agaactttgtgcttccttccccaatccaggactcagaacaggggacaggctgcctggt 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space: 261401
Effective search space used: 261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
