BAC Information

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BAC

Clone NameMSMg01-497F23
Chromosome9 (Build37)
Map Location 84,046,943 - 84,213,137
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
Downstream geneEG666669, LOC666672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497F23.T7 (MSMg01no497_f23.b1)MSMg01-497F23.TJ (MSMg01no497_f23.g1)
ACCAG573957AG573958
length756753
length of high quality
(start - end)		536 (54 - 589)580 (82 - 661)
definitionCHROMAT_FILE: MSMg01no497_f23.b1 PHD_FILE: MSMg01no497_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:02 2005CHROMAT_FILE: MSMg01no497_f23.g1 PHD_FILE: MSMg01no497_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,046,943 - 84,047,460)(84,212,558 - 84,213,137)
sequence
TTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTTTTACCTGGAAGTCAGGTTTTCATTCGTTCCTGT
ATTTTGTTTTCTTTTGAGGGTAACAGAAGCTGTGCAGTGGGTGAATAGTA
CCATACAGGATATGTCCACAGAACAGTCTCAGAAACAGCCATATCTTAAA
TGGGAAAGCATGTGAATGTGAGATTTAGTTAAGAATACATAGAGGAAGAA
TTAATTCAGATTTCCTAGGTGTGTTCTTAGAACAGCAGGAGAAGATTTAA
TGTACACTGAAGGCAAGAGTGATCTATTTGCAGTTTGGAGGATATAGTCA
CTAACCTACCCAGGGTGGCAGGCAGCCACCATCAGTGAACAAGAGGCAAA
GAAATGGATTCCTTCCCTAGGGTACAGTTCAGTGGAGACCTTAACTTTGG
ATACATCCTGAGAGACAAGATGCCAATGGTTCTAAGCAACCAAGATTGTG
CTTGTTTGTTACAGCTGCTTTAAGGTCTCGGCAAGAAGAATAACAGTTTC
TCTGCCATTAGAGTCTGAACTGTCATTCTAAAGTTGCAAAAGCTTAGAGT
TAACGTATTCATGTCCAGTATTCTCTTGACATTCTTATTCTCTCTCTTCA
CTTTTAAAAAAGGGAAACACGCCTTTTCCCCTGCTATCAGATCTTTTATT
AAAAATTTCTCAGGCTGTGCCCTCCATGTTGATTGGCTTTCTGCCATTCC
ATGAGC

NNNNNGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCACATTGGCTAATCCT
AGGGGGTCTCTCCAAGACTAAGTGCACTTGTAAAACTATTCATAAAAAGC
GTGTCCAGTTTCTCTCTGTGCTTCCTTTAACACCCTGGCTATATTTTACT
TGGACCACAAAACACATAACCCCCAACGCTTAGAATATTGCTCCCTTTCT
CAACTGCTTCAAGCAGTCAGTTATCTGCCCTTCTAGCCTTCTGACCAATA
AATTTGATTATGGTAAATTCTCCTTTGTGAGACCAGGATCCAAAATGTTC
TGCTATATTCCCAGGGCTTGCATTTGCTTCAGTCTCTGTTAATTAAGCAC
TTGCATGTGTAAAGATCTCAGCTCTTTTTCCCCATCTATGCATATATTCT
TTTTTAAAAATCCTGTCATCAGTCAGTTGAAATGTTTAGTCTTGCTTGAA
ATTAATTTTCCGCTTTTATTGTTCCAATTATTTGGCAGGTTTTGTGGCTT
TATCATAATTCCCCTGAGCCCTTTGAACCTGCTATGCTTTTTGTTCATGA
TGTTTCCTTAGCAACACATTGATTCAACTGACTGTCCTATGAGAATCAGG
GCATGGAAATATCCAGGATCTGAAGATAAGAAAAACGTTACAGGTTCTGA
TGCTTTGGTGACTTAAAGTGAATCTTTTTTGTATAAAATAATCTCCGGAT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_f23.b1 MSMg01no497_f23.b1 CHROMAT_FILE:
MSMg01no497_f23.b1 PHD_FILE: MSMg01no497_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:02 2005
         (536 letters)



>mm_chr9_84046725_84047660
          Length = 936

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 19  ctggaagtcaggttttcattcgttcctgtattttgttttcttttgagggtaacagaagct 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctggaagtcaggttttcattcgttcctgtattttgttttcttttgagggtaacagaagct 278

                                                                       
Query: 79  gtgcagtgggtgaatagtaccatacaggatatgtccacagaacagtctcagaaacagcca 138
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 279 gtgcagtgggtgaatagtaccatataggatatgtccacagaacagtctcagaaacagcca 338

                                                                       
Query: 139 tatcttaaatgggaaagcatgtgaatgtgagatttagttaagaatacatagaggaagaat 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tatcttaaatgggaaagcatgtgaatgtgagatttagttaagaatacatagaggaagaat 398

                                                                       
Query: 199 taattcagatttcctaggtgtgttcttagaacagcaggagaagatttaatgtacactgaa 258
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 399 taattcagatttcctaggtgtgttcttagaacagcaggagaagatttcatgtacactgaa 458

                                                                       
Query: 259 ggcaagagtgatctatttgcagtttggaggatatagtcactaacctacccagggtggcag 318
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggcaagagtgagctatttgcagtttggaggatatagtcactaacctacccagggtggcag 518

                                                                       
Query: 319 gcagccaccatcagtgaacaagaggcaaagaaatggattccttccctagggtacagttca 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gcagccaccatcagtgaacaagaggcaaagaaatggattccttccctagggtacagttca 578

                                                                       
Query: 379 gtggagaccttaactttggatacatcctgagagacaagatgccaatggttctaagcaacc 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtggagaccttaactttggatacatcctgagagacaagatgccaatggttctaagcaacc 638

                                                                       
Query: 439 aagattgtgcttgtttgttacagctgctttaaggtctcggcaagaagaataacagtttct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagattgtgcttgtttgttacagctgctttaaggtctcggcaagaagaataacagtttct 698

                                                 
Query: 499 ctgccattagagtctgaactgtcattctaaagttgcaa 536
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctgccattagagtctgaactgtcattctaaagttgcaa 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no497_f23.g1 MSMg01no497_f23.g1 CHROMAT_FILE:
MSMg01no497_f23.g1 PHD_FILE: MSMg01no497_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:02 2005
         (580 letters)



>mm_chr9_84212358_84213337
          Length = 980

 Score = 1098 bits (568), Expect = 0.0
 Identities = 577/580 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcacattggctaatcctagggggtctctccaagactaagtgcacttgtaaaactattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 catcacattggctaatcctagggggtctctccaagactaagtgcacttgtaaaactattc 721

                                                                       
Query: 61  ataaaaagcgtgtccagtttctctctgtgcttcctttaacaccctggctatattttactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 720 ataaaaagcgtgtccagtttctctctgtgcttcctttaacaccctggttatattttactt 661

                                                                       
Query: 121 ggaccacaaaacacataacccccaacgcttagaatattgctccctttctcaactgcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ggaccacaaaacacataacccccaacgcttagaatattgctccctttctcaactgcttca 601

                                                                       
Query: 181 agcagtcagttatctgcccttctagccttctgaccaataaatttgattatggtaaattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agcagtcagttatctgcccttctagccttctgaccaataaatttgattatggtaaattct 541

                                                                       
Query: 241 cctttgtgagaccaggatccaaaatgttctgctatattcccagggcttgcatttgcttca 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 540 cctttgtgagaccaggatccaaaatgttcttctatattcccagggcttgcatttgcttca 481

                                                                       
Query: 301 gtctctgttaattaagcacttgcatgtgtaaagatctcagctctttttccccatctatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtctctgttaattaagcacttgcatgtgtaaagatctcagctctttttccccatctatgc 421

                                                                       
Query: 361 atatattcttttttaaaaatcctgtcatcagtcagttgaaatgtttagtcttgcttgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atatattcttttttaaaaatcctgtcatcagtcagttgaaatgtttagtcttgcttgaaa 361

                                                                       
Query: 421 ttaattttccgcttttattgttccaattatttggcaggttttgtggctttatcataattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttaattttccgcttttattgttccaattatttggcaggttttgtggctttatcataattc 301

                                                                       
Query: 481 ccctgagccctttgaacctgctatgctttttgttcatgatgtttccttagcaacacattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccctgagccctttgaacctgctatgctttttgttcatgatgtttccttagcaacacattg 241

                                                   
Query: 541 attcaactgactgtcctatgagaatcagggcatggaaata 580
           ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 240 attcaactgactgtcctatgagattcagggcatggaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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