BAC Information

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BAC

Clone NameMSMg01-498D19
Chromosome9 (Build37)
Map Location 30,738,801 - 30,739,174
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478, Adamts15
Downstream geneAdamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498D19.T7 (MSMg01no498_d19.b1)MSMg01-498D19.TJ (MSMg01no498_d19.g1)
ACCAG574611AG574612
length769759
length of high quality
(start - end)		478 (68 - 545)371 (66 - 436)
definitionCHROMAT_FILE: MSMg01no498_d19.b1 PHD_FILE: MSMg01no498_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:11 2005CHROMAT_FILE: MSMg01no498_d19.g1 PHD_FILE: MSMg01no498_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCACAATCCCCTGTGCTCCTCTAAGGGGCTTGAGTCACTTCTCC
AGCCCCACTCTCTACAGCACACATAGCTTGTGTTCTAGGCCCCCATGGGC
TCCATTCCAGTACTGCTACAGTTCTTGGTGGTCATTCCATGCATGGTACT
GGTATCTCCAAAGTGCTGGAATCTTGTGCTGCAACTGGGCTGCATTTTCT
CCAGTAATCTCTCATAGGCGCTCTTCAAGGACTCCATCCCTGCCACACAG
TGCCAAGCCGAAGGCACTCTCTAATACTCCCCATACCTTCAAAACCAGTG
CCTCGTGGATGACTCTTACACTACCAAGTTCAGATGCCAGCACAAGGCAC
AGTCTTGGTCATGTCTTGAACACAGATTGTGTGTGCTGACTCTAAACACT
GTCCAGAACATTTCACGTCAATGATGCTGGACTCTTCTTAATCACTGCTA
ATTTCTCAGATCCAGCTGACCAGCATCAAATATCCCAACAAAGCAAAGGT
TCCACTTCAGTAGTTCTGATATCTTGGTAATCACAGCCCCGGCTAACCAG
AAACAAAGATTCTTTCACCCCACCCCCCAAAAAACCAGGTAGGGTCTTTG
CTTCGCTCTTGAACTTCACACACCAAGCCTCCATCATCTGCAATGTTCTC
AACAGTCCTTATCTTTCCAAGAATTGGACACTCAATAAGTTTTTCTTGTA
CCAAGTTCCCAAAGACCTC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATGTAAGCCAACTTGTATGTGTCTAAGGGCTGTG
TGACTGGAAGGAAGATGCAGAGCTGCCCATGGATGGATACTGAAGGAGCG
AACATGGAAACATGAGGGCTGAGGAGTCCCTGTGCAGATCTTAATGCAAA
ATACGTGCCTTGGCTCTAATTCTGCTACTCCTTAACGAGAGATTTGTGTC
CTTTGACTCTGATTTAATTTTTTGCTTAAATTCTTTGCTATTTAAAACGC
TTACTATTATTATTTATTATTAATGAATGTGTTCATATGTGATGTGTGCA
TGTGCTTTGATATGTGTATATGAGAGAGAGAGAGAGAAAGAGAGAGAGGG
AGAGAAAAGGAGAGAGAGAAAGGGAGGGAGGGAGAGANANNNNTNNNNNN
NNNNTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTT
TTTTNTTTTTTTTTNTTNTTTTNNTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTT
NTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTNTTTTTNNTTTTTTTT
TTTTTTTTTTTTTTNTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTNNTNN
TTNTTTTTTNTTTTTTTTTTTTTTTTNNNNNTNTTTTTTTTTTTTTTTTT
TNNNTNTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_d19.g1 MSMg01no498_d19.g1 CHROMAT_FILE:
MSMg01no498_d19.g1 PHD_FILE: MSMg01no498_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:11 2005
         (371 letters)



>mm_chr9_30738668_30739439
          Length = 772

 Score =  640 bits (331), Expect = 0.0
 Identities = 362/375 (96%), Gaps = 7/375 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtaagccaacttgtatgtgtctaagggctgtgtgactggaaggaagatgcagagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 catgtaagccaacttgtatgtgtctaagggctgtgtgactggaaggaagatgcagagctg 448

                                                                       
Query: 61  cccatggatggatactgaa-ggagcgaacatggaaacatgagggctgaggagtccctgtg 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cccatggatggatactgaagggagcgaacatggaaacatgagggctgaggagtccctgtg 388

                                                                       
Query: 120 cagatcttaatgcaaaatacgtgccttggctctaattctgctactccttaacgagagatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagatcttaatgcaaaatacgtgccttggctctaattctgctactccttaacgagagatt 328

                                                                       
Query: 180 tgtgtcctttgactctgatttaattttttgcttaaattctttgctatttaaaacgcttac 239
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtgtcctatgactctgatttaattttttgcttaaattctttgctatttaaaacgcttac 268

                                                                       
Query: 240 tattattatttattattaatgaatgtgttcatatgtgatgtgtgcatgtgctttgatatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tattattatttattattaatgaatgtgttcatatgtgatgtgtgcatgtgctttgatatg 208

                                                                       
Query: 300 tgtatatgagagagagagagagaaagagagagagggagaga-----aaaggagagagaga 354
           |||||||||||||||||||||||  |||||| |||||||||     ||||| ||| ||||
Sbjct: 207 tgtatatgagagagagagagagagggagagaaagggagagagagagaaagg-gagggaga 149

                          
Query: 355 aagggagggagggag 369
            ||||||||||||||
Sbjct: 148 gagggagggagggag 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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