BAC Information

Click to search

BAC

Clone NameMSMg01-498P05
Chromosome9 (Build37)
Map Location 31,637,957 - 31,638,376
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498P05.T7 (MSMg01no498_p05.b1)MSMg01-498P05.TJ (MSMg01no498_p05.g1)
ACCAG575150AG575151
length746780
length of high quality
(start - end)		525 (79 - 603)59 (304 - 362)
definitionCHROMAT_FILE: MSMg01no498_p05.b1 PHD_FILE: MSMg01no498_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:12 2005CHROMAT_FILE: MSMg01no498_p05.g1 PHD_FILE: MSMg01no498_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGCCCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGAGCTTTCCCTGCCTCTGCCTCCTGAATACTGAA
ATTAAAGGCTTGGGCTACCATATCCTTCTCTACATTGAATATAGTTATAA
TACTTAACACTTTCTCTACTAATATGTGATGTTCTTTATGTCCTGCAATT
AGTTTTGGCTCTTCTTGTTCAGATATAATCATTACTTTTTTGCTTGCCCT
TTGCAATGGTTTGAATATGCTTGGCCTAGAGAGTGGCACTATTAGGAGCA
AGACTACACTGTGGGGGTCTCAGCCTTGATATCCTTGTCCTAGCTGCCTG
GGAGCCAGTCTTGTTTGCTTTTAGAAGAAGATGTAGAACTCTCAGCTTCT
TCAGAGCCATGCCTGCCTGGATGCTGCCATGCTTCCTGCCTTGATGATAA
TGGACCAAACCTCAGACCCTTTTATTCAGCTCCAATTAAATGTGTTTTGT
TTTTGTTTTTGTTTTTAATAAGAGTTGCCTTGGTCATGGTGTTTCTTCAC
AGAAATGGAAACTCTAAGACACCTCTGGATTCCATTTGTTTGGAATATTA
TCTGTCCTTCCACTGTTTATCCTTCATTGTCAGNAGGATGAGTTTCATGA
CAACAATAAACATTTGGATCTTGCTTTTCAATCTATCCACCCATTTTGCA
TATTCTAATTAAATAGCTAAGATTATTTGAATTTGCCTATTCTTTT

GGAATTCAGCGGAGCGAGGNAACGAAACGAGGGTNNNNNNAGCGNNNNAN
ACCCATGATATGGGTAGTCGGGNGGNCGCCTGTTTCGGACTCGAGGNGAA
NNANAGAAGTTACGNGACGGGGGCNGNACNGGGGCANANGANCNNNGAAA
GACAAGGGCCNCTTCCCCCACAGAAGGCCGACNAGGCCANCNNCGGCNAC
ANANGCAGCAAGAGNCAGGAGCNCCGGAGGNNCACAACGGGGNNCCNCAA
ANAGGGCNGCAGACCNCNNCAGCGCCGGGGNACNGNCNCGAGCNCCTTTT
TTGTGGGCCCTGAAGAACAGGTCATTCTTATCAAGGGAATAATTAACCAA
TAAGACATTACTATTTTTTTTATGNANGCACCAAACCCNGGGGCACCCAA
NNNCATTTTCCACCCCGCANNACGGGAGGGCNCANNCAGGGNNNCNANNC
CGGCACAAACCCCACGACCAAGAAGCAAGNGGGGGAGGAAAGGNGAAACC
NGGCCNACACNNCCANACCGCGGNNCAACACCAAGGAAGNCAGGACGGGA
ACCCAAGCAGGCCAGGAAGCAGGAGCNGAAGCAAAGGCCACGGAGGGAAG
GCCCCCACAGGAACGCNAACCCAGAGCAGCACAGCCGGCCCGCGCAGAGA
ACCCAAGACAACCAGCCCAGAGAAGGCCCCACCCACAAGGGGCCCCCCCC
CCTTGATTTTTAATTGAGAAAAAGCCTTGCAGTTGGATTTCATGGAGGCA
CATCCTTAAAAGTAAGTTTTTTCCTCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_p05.b1 MSMg01no498_p05.b1 CHROMAT_FILE:
MSMg01no498_p05.b1 PHD_FILE: MSMg01no498_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:12 2005
         (525 letters)



>mm_chr9_31637957_31638881
          Length = 925

 Score =  735 bits (380), Expect = 0.0
 Identities = 408/420 (97%), Gaps = 5/420 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctgcctcctgaatactgaaattaaaggcttgggctaccatatccttctctacattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cctctgcctcctgaatactgaaattaaaggcttgggctaccatatccttctctacattga 361

                                                                       
Query: 61  atatagttataatacttaacactttctctactaatatgtgatgttctttatgtcctgcaa 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 360 atatagttataatacttaacactttctctactaatatatgatgttctttatgtcctgcaa 301

                                                                       
Query: 121 ttagttttggctcttcttgttcagatataatcattacttttttgcttgccctttgcaatg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttagttttggctcttcttcttcagatataatcattacttttttgcttgccctttgcaatg 241

                                                                       
Query: 181 gtttgaatatgcttggcctagagagtggcactattaggagcaagactacactgtgggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtttgaatatgcttggcctagagagtggcactattaggagcaagactacactgtgggggt 181

                                                                       
Query: 241 ctcagccttgatatccttgtcctagctgcctgggagccag-----tcttgtttgctttta 295
           ||||||||||| | ||||||||||||||||||||||||||     |||||||||||||||
Sbjct: 180 ctcagccttgagacccttgtcctagctgcctgggagccagtcttctcttgtttgctttta 121

                                                                       
Query: 296 gaagaagatgtagaactctcagcttcttcagagccatgcctgcctggatgctgccatgct 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 120 gaagaagatgtagaactctcagcttcttcagagccatgcctgcctggatgctgtcatgct 61

                                                                       
Query: 356 tcctgccttgatgataatggaccaaacctcagacccttttattcagctccaattaaatgt 415
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 60  ccctgccttgatgataatggaccaaacctcagacccttttagtcagctccaattaaatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |