BAC Information

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BAC

Clone NameMSMg01-498P13
Chromosome9 (Build37)
Map Location 18,778,867 - 18,779,193
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726
Downstream geneOlfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498P13.T7 (MSMg01no498_p13.b1)MSMg01-498P13.TJ (MSMg01no498_p13.g1)
ACCAG575166AG575167
length759742
length of high quality
(start - end)
635 (76 - 710)327 (315 - 641)
definitionCHROMAT_FILE: MSMg01no498_p13.b1 PHD_FILE: MSMg01no498_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:14 2005CHROMAT_FILE: MSMg01no498_p13.g1 PHD_FILE: MSMg01no498_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGCATCCG
CGGAATTCTTTGTTTTCACCTGTACCCCACTTTTAATAGGGTTATTTGGT
TCTCTGGAGTCTAATTTCTTGAGTTCTTTGTGTATATTGGAAATCAGCCC
TATAACAGATGTAGGGTTGGTAAATATTTCCCAATCTGTTGGTTGCTATT
TTGTTCTATTGACAGTGTTCTTTGCCTTACAGAAGCTTTACAGTTTTATG
AGGTCCCATTTGTTGATTCTTGATCTTACAGCACAAACCATTGGTGTTAA
GTTCAAATAATGTGCCCAAGTGTTTGTTTTTCTTCCCCACATTTTCTTCT
ATTAGTTTCAGTGTATCTTGTTTTATGTAGAGGACCTTAATCCATTTGGA
CTTAAGCTTTTTATGAGATTAAAAATGGACCAATTTGCATTCTTCTACAC
GATGACTGGCAGTTGAACCAGCACCATTTGTTGAAAGTGCTATCTTTTAT
CAACTGTATGGTTTTAGCTCCTTTGTCAAGTAACCATAGGTATGTGGGTT
CATTTCTGAGTCTTCAGTAATATTCCATTGATCTGCCTGTCTGTCATTGT
ACCAGTACTATGCAGTTTTTTATCACAATTGCTCTGTATTACAGATTGAG
GCCAGGAATGGTGATTCCATCAGAGGTTCTTTTATTGTTGAAATAGTTTT
TGCTAACCTAGATTTTCTGATAATACAGATGGATTTGCAAATTGCCATTC
TAACTCTAT
CCTGGAGGNNGCCCGGTTGAACATTGGGGGTGACACATAGAAGGTTACGC
CAACACGCGGCNNCACTTGNCAAGGAAAAAAATTAGACGAGGAGGTGAGA
TAAGAGGAGAAGTGAGGAAATGAGAAGTTAGATGAGAAGAGGAAAGACGG
GACAGAAATAAAAAAGAGAAAAGGCAGGAGAAGACATTAGAAGAGAAAAT
AAAACTACCAAAAATGAGAAGGAGTGAAAGGAACAGATTTTTAGGACATG
GCAGGGAGGGAGCAAGGAGAAGATGGGAGAGAAGAGAAGAGAGAAGTAGA
AATTTAATGAGNTTAAAGGGAGAATTGTAACAGAAGAAAATAAATATTAC
AGAAACCTCCATTTCTCATGTATTTACTGTGGAAAGCTTCAGATTACCTC
CCCCCCCAAATGAAGAGTTGTATACTTCTATACTGGATATTGCTGAATAA
AGGTTGAAAATGTAATCCCAGGAAAGATAGATTGACTACAGAGAAAACAA
GTTTCTTAACCAGGAATTGCATGTCTGGGTATAAAATCAAATGTGCTTCT
CCTGTACTGTACATTGTTATGTTATAAAGCAGACACATGTCCACTATTTG
CAGTATTGGTGGCCCTTAGGGTTCAATTACCTAACTCCTCATTATCCATA
TTTGAAATTGTTTTATCTTCCCAAGGCAACTCAAATCCTTAAGGAATAAA
ATTAACAGAAATAGAAAAATCTGTCTGAATAAACCCTTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_p13.g1 MSMg01no498_p13.g1 CHROMAT_FILE:
MSMg01no498_p13.g1 PHD_FILE: MSMg01no498_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:14 2005
         (327 letters)



>mm_chr9_18778667_18779393
          Length = 727

 Score =  551 bits (285), Expect = e-161
 Identities = 316/333 (94%), Gaps = 12/333 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagggagaattgtaacagaagaaaataaatattacagaaacctccatttctcatgtatt 60
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 527 aaagggagaattgtaacagaagaaaataaataaaacagaaacctccatttctcatgtatt 468

                                                                       
Query: 61  tactgtggaaagcttcagattacctcccccccc------aaatgaagagttgtatacttc 114
           |||| ||||||||||||||||||||       |      |||||||||||||||||||||
Sbjct: 467 tactatggaaagcttcagattacct------tcaatataaaatgaagagttgtatacttc 414

                                                                       
Query: 115 tatactggatattgctgaataaaggttgaaaatgtaatcccaggaaagatagattgacta 174
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 413 tatactggatattgctgaataaaggttgaaaatgtaatcccaggaaacatagattgacta 354

                                                                       
Query: 175 cagagaaaacaagtttcttaaccaggaattgcatgtctgggtataaaatcaaatgtgctt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cagagaaaacaagtttcttaaccaggaattgcatgtctgggtataaaatcaaatgtgctt 294

                                                                       
Query: 235 ctcctgtactgtacattgttatgttataaagcagacacatgtccactatttgcagtattg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctcctgtactgtacattgttatgttataaagcagacacatgtccactatttgcagtattg 234

                                            
Query: 295 gtggcccttagggttcaattacctaactcctca 327
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gtggcccttagggttcaattacctaactcctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)