BAC Information

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BAC

Clone NameMSMg01-498P15
Chromosome9 (Build37)
Map Location 113,508,951 - 113,509,191
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680
Downstream genePdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498P15.T7 (MSMg01no498_p15.b1)MSMg01-498P15.TJ (MSMg01no498_p15.g1)
ACCAG575170AG575171
length762808
length of high quality
(start - end)
241 (78 - 318)179 (481 - 659)
definitionCHROMAT_FILE: MSMg01no498_p15.b1 PHD_FILE: MSMg01no498_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:14 2005CHROMAT_FILE: MSMg01no498_p15.g1 PHD_FILE: MSMg01no498_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTAAACGGGGGGNGGA
ANTCANCAGGATGCCCAACAAAGGGCTCAAATTCAAGACCAGTGTAAGCT
TAAAAACAGACCCTGGTGAGGTGACCCTCATCTCTTATCTGTTGGTCATT
AATTATCTAATTAATTGTCATTAATTATCTTATTGTCATGAGCAGATGAG
AGAAAAAGTAATTCCTTCAGGTGTGTTCAAACACATCAAAAAAGTTTAAA
ATATGTCACTAGCCATCCAGCCAAGCCTCAGCTGTCACCCAATACTCTGA
GGTATCCTGAATCAAGTTAGTTTCTTCTAGGGGTGACTTTCTTTCCTCCT
GACAAACCATTTGACCATGTCTGTCACTGGACGGTTGTTGTAACTGGCAT
CTATTACATATAACCCGTTTTACACTGCTAAATATTTTGTAGTGCACAGG
GCAGCTGCCTGCAGTGAAAGCTCATTGGCTTGAAATTCAAAGGGTGTTGT
TGAGAAAGCTGCCCAAGCCCAAGGGCATAGCGGAAACACCGGTACACGCG
GAGTCCTTGCTGGGGTATCAGATCCCTAGATATCCAGTTATCCCACGCTT
TGCACAATGAGAATACTGTGACCCAAAAAGCACACACTACAGTCTCGGCA
GCCATAATCTGTGATGAGGTCAATGCTGCCATCAAGTCATTTCAGATTAG
CTCACTGGCCAAGCTAAGCACTCCTTATGAGCTTTTTAGTAGAGTCTGGG
ATGCCCAATGTN
AAAAAGAGAAAGCAACCGCACACGCCGACCGAGGCCNNNNCAAACATNCN
NNAACGAAGAAAAGGGGAGGCCGGGNNGGNNGCCGGGTTACCGCACCCGA
NGGNGANNNNANNNANGTTGACAAGCAGGGAGGAGACCNCNNNNGAGCNA
ACCAAAAAAACAAGCAAACAAANAAAACAACCACCACCAGCCNAAAAAAA
GAAAAAGGAAAGGAAAAGGCAAGACCAGCCACAGAAGAACACGGCCCAAA
AAAAGCAAGNCCNAACCAACAAAAANGAANGACANAAGCAAGCACCAAAA
CCAAGGAGNNCAGTAAAGCCCCGAGAANACAGNNGCNANAAAAANCAGCG
GNGCNGGGCACGGCGGCGGNACACACCTCTTTTTTTAGCAGAGAGGCAGA
GACAGGNGGAACNCNACTGGTCTGCACACCAAGNACCAGACAGGCAGGAA
AAAGCTTTAGACTCTGTCACAAAACCCACCAAAACAAACAAAGAAAACCT
GAGAGAATTCCTGCTATGATTCTAGTACCCAGAAACCTAAAGCACAAACA
TCACAAATTCAAGGTCAACCTGGGCCACAGAGTGAGACCCTGCTACAAAA
ACAAACTGTGAAACTTCTACACACTAGCATTCAAAAACTGAGGAGGAAAA
CAAATTACAGCTTGTATGTCTAATGGACCCCCAAAAGTCAAGGTTAAAAC
TGCTCCCAGATGGCGGATGACACTGCTTTGAGGGGTTATGGACATTTTGG
GAACACGGCCTATGTAGCAGAAAAGAACGGCCGGAGACAGGCCACCCGTA
CAGAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_p15.b1 MSMg01no498_p15.b1 CHROMAT_FILE:
MSMg01no498_p15.b1 PHD_FILE: MSMg01no498_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:14 2005
         (241 letters)



>mm_chr9_113508751_113509391
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattcaagaccagtgtaagcttaaaaacagaccctggtgaggtgaccctcatctctta 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caaattcaagaccagtgtaagcttaaaaacagaccctggcgaggtgaccctcatctctta 260

                                                                       
Query: 61  tctgttggtcattaattatctaattaattgtcattaattatcttattgtcatgagcagat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tctgttggtcattaattatctaattaattgtcattaattatcttattgtcatgagcaggt 320

                                                                       
Query: 121 gagagaaaaagtaattccttcaggtgtgttcaaacacatcaaaaaagtttaaaatatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagaaaaagtaattccttcaggtgtgttcaaacacatcaaaaaagtttaaaatatgtc 380

                                                                       
Query: 181 actagccatccagccaagcctcagctgtcacccaatactctgaggtatcctgaatcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 actagccatccagccaagcctcagctgtcacccaatactctgaggcatcctgaatcaagt 440

            
Query: 241 t 241
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)