BAC Information

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BAC

Clone NameMSMg01-499I24
Chromosome9 (Build37)
Map Location 22,140,817 - 22,141,434
singlet/doubletsinglet
Overlap geneAnln
Upstream geneSlc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603
Downstream gene9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499I24.T7 (MSMg01no499_i24.b1)MSMg01-499I24.TJ (MSMg01no499_i24.g1)
ACCAG575615AG575616
length721754
length of high quality
(start - end)		644 (64 - 707)618 (73 - 690)
definitionCHROMAT_FILE: MSMg01no499_i24.b1 PHD_FILE: MSMg01no499_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:58 2005CHROMAT_FILE: MSMg01no499_i24.g1 PHD_FILE: MSMg01no499_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCATAAATCCGCGGAATTCATTGG
CCTTAGCATCTTACCTCCTGATGCTTCCGAGTTTCCTAGGGGAAACTAAG
AAATGATTGACCGGATACTTCCTTTTGTTGCCGTTCTGAAAAACCAAAAC
AGGCCAAGCAATCACAAAGCATGATCTTTATTTGAATTAGGCAGTAAAAA
CGACTGGTCAGGGATGACAGTACAGACTCTGCAGCTGTGTCTTTGAACGT
TCATCTTCGTAAGTATTTAAACAGATGACAAACTTTATTGTACTCAGGGC
CACAGAACAGATCTTTTATCTGAACTCAGACCCTGAAGGGGAGTTGCACA
GCATTTTTAAAGGAAGAAACCCTAAAGTTCTGCGGGAGTGGGGTGGGCAG
TAGTGTTGTCCAATCATATTTTGACACAGGAATTGAGCAAGGGTGTAAGC
GTTGGTGACTGAGCCTCATCCAGGCCACCAGGTTTCAGCATCCTTAACTC
ACGGCCTTGGTACTCAGGCCCCTCCTGGGCTCCTGGTTCAGAACCCAGAA
TGACTAAGGAACAAAGGAGTAGGTGAGCTGCAGAGCTGCTTATAGTTATT
AAGTCACGACTTACAATACATTTACAACTGTGTGCCTTAGTTTAGATAAC
TGGCAACTTCCCTCTTTATGTTCTTTATTGGTTAACAGACAGACATGAAT
CACCTAAGGCAGGATAGGAGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTGTCCAAACATGTCACAGTGAATTG
AGTTGTTGTGTTTGTGCATTGCTGCATTTAAATGCAGCCCTGTGGCTTTT
GATAAGGCCAATGAGGTTGAAGATAGAGGGCATGAGGAACATGAACTGTA
ATAGTTCATGGAGCAAGGATGGAAGGTGAAGAAATAGCACAAAGCCTCAG
AGAAGGGTATGTGTGGAATGCACAGAGGGTTGTGCAAAACTAACTGTTTT
TCTCTGCTACCTAAGGATTTGTGTGATGCTATTGATGTTGCAAATCAGGT
TGCAGTTATTGTCAGAGGTGTAAAGAGGAGCTAGGATTTGAGTCACGTAG
GTGAAGCAGACTGAATCAGATTCATTAGACATGCTTTTCCTCTCTTGTTA
GCGCTATTCATAGTTGAGTCTGTAGATGGGACTGCGTGTGCTCCAAAGGT
TCTCCATTCTCACGAACACTTTTGTATCACCAGCTTTTGTCAGTATGAGT
GAGACATACATTCTTTGTATTTGTCTTTGTCTTCATTACTAGAATAGCAC
CTTGTCTTCTGTGTATGGCCTTTGTGATGGTTTGAATGAGGCGCATATAT
TTGAATACATGGACTCAGGTTGGTGAAACTGTTTGGGAAGGATTAGGAAG
TATGCTGGCTAGTTTTCTTTTAGCTTGATTCAAGCTGAAGTTATCTGAAA
AGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_i24.g1 MSMg01no499_i24.g1 CHROMAT_FILE:
MSMg01no499_i24.g1 PHD_FILE: MSMg01no499_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:58 2005
         (618 letters)



>mm_chr9_22140685_22141702
          Length = 1018

 Score = 1187 bits (614), Expect = 0.0
 Identities = 617/618 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtccaaacatgtcacagtgaattgagttgttgtgtttgtgcattgctgcatttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cattgtccaaacatgtcacagtgaattgagttgttgtgtttgtgcattgctgcatttaaa 691

                                                                       
Query: 61  tgcagccctgtggcttttgataaggccaatgaggttgaagatagagggcatgaggaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgcagccctgtggcttttgataaggccaatgaggttgaagatagagggcatgaggaacat 631

                                                                       
Query: 121 gaactgtaatagttcatggagcaaggatggaaggtgaagaaatagcacaaagcctcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaactgtaatagttcatggagcaaggatggaaggtgaagaaatagcacaaagcctcagag 571

                                                                       
Query: 181 aagggtatgtgtggaatgcacagagggttgtgcaaaactaactgtttttctctgctacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aagggtatgtgtggaatgcacagagggttgtgcaaaactaactgtttttctctgctacct 511

                                                                       
Query: 241 aaggatttgtgtgatgctattgatgttgcaaatcaggttgcagttattgtcagaggtgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaggatttgtgtgatgctattgatgttgcaaatcaggttgcagttattgtcagaggtgta 451

                                                                       
Query: 301 aagaggagctaggatttgagtcacgtaggtgaagcagactgaatcagattcattagacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagaggagctaggatttgagtcacgtaggtgaagcagactgaatcagattcattagacat 391

                                                                       
Query: 361 gcttttcctctcttgttagcgctattcatagttgagtctgtagatgggactgcgtgtgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcttttcctctcttgttagcgctattcatagttgagtctgtagatgggactgcgtgtgct 331

                                                                       
Query: 421 ccaaaggttctccattctcacgaacacttttgtatcaccagcttttgtcagtatgagtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccaaaggttctccattctcacgaacacttttgtatcaccagcttttgtcagtatgagtga 271

                                                                       
Query: 481 gacatacattctttgtatttgtctttgtcttcattactagaatagcaccttgtcttctgt 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 270 gacatacattctttgtatttgtctttgtcttcattactagagtagcaccttgtcttctgt 211

                                                                       
Query: 541 gtatggcctttgtgatggtttgaatgaggcgcatatatttgaatacatggactcaggttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gtatggcctttgtgatggtttgaatgaggcgcatatatttgaatacatggactcaggttg 151

                             
Query: 601 gtgaaactgtttgggaag 618
           ||||||||||||||||||
Sbjct: 150 gtgaaactgtttgggaag 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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