BAC Information

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BAC

Clone NameMSMg01-499P23
Chromosome9 (Build37)
Map Location 99,992,337 - 99,992,879
singlet/doubletsinglet
Overlap genenone
Upstream genePik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
Downstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499P23.T7 (MSMg01no499_p23.b1)MSMg01-499P23.TJ (MSMg01no499_p23.g1)
ACCAG575945AG575946
length671694
length of high quality
(start - end)
543 (52 - 594)512 (61 - 572)
definitionCHROMAT_FILE: MSMg01no499_p23.b1 PHD_FILE: MSMg01no499_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:33 2005CHROMAT_FILE: MSMg01no499_p23.g1 PHD_FILE: MSMg01no499_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATCACTATTGTCAGAAGATGCGCGGAATCAGCAAAGATGCAAGGAGAG
TCCCTCTAAGCCAGAGTGTGGATAAACTGAAAGGGGATGGCCTTTCTAGC
CAAGAGGTTCCAGAGACCCAGAGGCTGAGAGGCCCAGGGCTCTGGGTATG
AGTTACAGGACAGAGAAGGAAAGGCAGCAGTGATCTCACTAAGCTAAAGA
CGACATCACAGCTGCAGTAGGAGCTCATGTACCAAAGCGCCAAGAACTGT
GGGCTGCAGCTGCTCTGGCTGGCCAAGTGCTTCTCTCTGAGCGCCTGTTA
TTCTTGCACTGAACTGTCAGCTTTCTCATCTCTACTATCACTAGGGTTTC
CATTGTTCATCTACACGGGTCTGGGACTCCAAACTACAGTTTCCAGCGCA
CCCGTCTGCCTTTGTTTTGAGACTTGCTTCACTTCATAGTTGCACCTTTT
AGCTTCTGGGTTTGGTTGCTCACTTTGCAATTCTATTCCGTTTAAAACAT
GAAGCTGGAATCTAGAGCCCTGGAGCCTAGGCAGAGCTGTGATCATGTGG
TCTTGGCTGTGAGCATGGACAGAATGGTAATCTGAGATAATAAGGTAGCA
AATGAAATGAAAAAATGAGAACCACACACATGATTCAGGTCATTAGTGGG
AAAGAGCTATGATGTTCTAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCACCTGAGGAATACCGAATGGTAGAAAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCCG
AGATTCCACCTCACACCAGTCAGAATAGTTAAAATCAAAAATTCAGGTGA
CCGCAGATGTTGGTGAGGATGTGTAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAGCAGTCTGGCAGTTC
CCCAGAAATTTGGAAATAGTGTACTACCAGAGGATCCAGCAATACCTCTC
CTGGACATATATCCAGAAGATGTCCCAACCGGTATGAAGGACACATGCTT
TACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGGATTAAA
GGCGTGCACCACCACCGCCCAGCAACACCATCAGTCTTAGAATTGGAAAT
AAAACACCCATGGAAGGAGTTACAGTGACAATGTTTGGAGCTGTGACGAA
AGCATGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATCA
GCTTCCAAACGCTGACTCCATTGCATACACTANCAAGATTTTGCTGAAAG
GACCCAGATATGTCTGTCTCTTGTGAGACTATGCCAGGGGCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_p23.b1 MSMg01no499_p23.b1 CHROMAT_FILE:
MSMg01no499_p23.b1 PHD_FILE: MSMg01no499_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:33 2005
         (543 letters)



>mm_chr9_99992137_99993079
          Length = 943

 Score = 1011 bits (523), Expect = 0.0
 Identities = 538/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctctaagccagagtgtggataaactgaaaggggatggcctttctagccaagaggttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 743 ccctctaagccagagtgtggataaactgaaaggggatggcctttctagccaagagattcc 684

                                                                       
Query: 61  agagacccagaggctgagaggcccagggctctgggtatgagttacaggacagagaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agagacccagaggctgagaggcccagggctctgggtatgagttacaggacagagaaggaa 624

                                                                       
Query: 121 aggcagcagtgatctcactaagctaaagacgacatcacagctgcagtaggagctcatgta 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 aggcagcagtgatctcactaagctaaagactacatcacagctgcagtaggagctcatgta 564

                                                                       
Query: 181 ccaaagcgccaagaactgtgggctgcagctgctctggctggccaagtgcttctctctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccaaagcgccaagaactgtgggctgcagctgctctggctggccaagtgcttctctctgag 504

                                                                       
Query: 241 cgcctgttattcttgcactgaactgtcagctttctcatctctactatcactagggtttcc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cgcctgtaattcttgcactgaactgtcagctttctcatctctactatcactagggtttcc 444

                                                                       
Query: 301 attgttcatctacacgggtctgggactccaaactacagtttccagcgcacccgtctgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 443 attgttcatctacacgggtctgggactccaaactacagtttccagtggacccgtctgcct 384

                                                                       
Query: 361 ttgttttgagacttgcttcacttcatagttgcaccttttagcttctgggtttggttgctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgttttgagacttgcttcacttcatagttgcaccttttagcttctgggtttggttgctc 324

                                                                       
Query: 421 actttgcaattctattccgtttaaaacatgaagctggaatctagagccctggagcctagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actttgcaattctattccgtttaaaacatgaagctggaatctagagccctggagcctagg 264

                                                                       
Query: 481 cagagctgtgatcatgtggtcttggctgtgagcatggacagaatggtaatctgagataat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagagctgtgatcatgtggtcttggctgtgagcatggacagaatggtaatctgagataat 204

              
Query: 541 aag 543
           |||
Sbjct: 203 aag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)