Query= MSMg01no500_f19.b1 MSMg01no500_f19.b1 CHROMAT_FILE:
MSMg01no500_f19.b1 PHD_FILE: MSMg01no500_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:59 2005
(624 letters)
>mm_chr9_65633845_65634868
Length = 1024
Score = 888 bits (459), Expect = 0.0
Identities = 483/493 (97%), Gaps = 4/493 (0%)
Strand = Plus / Minus
Query: 1 atggccagtggtacctttttgacctcggaaaggaaaggaagagagggtgggaaatccctt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggccagtggtacctttttgaactcggaaaggaaaggaagagagggtgggaaatccctt 442
Query: 61 aacctttagaccctggaagtattttttaaacccttagtgtttttcttttgaaagtactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctttagaccctggaagtattttttaaacccttagtgtttttcttttgaaagtactct 382
Query: 121 atggaacagttccacatgaagtgctaactaaggtgagaatgaaagtcaccatttctttta 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcgaacagttccacatgaagtgctaactaaggtgagaatgaaagtcaccatttctttta 322
Query: 181 gcatcagtagcttttggtggctggataaagactccactgtcagacttcaaccagggctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatcagtagcttttggtggctggataaagactccactgtcagacttcaaccagggctcc 262
Query: 241 cattaacccttaggctcaatttttcacaatttgcattttagcattgcatttcctccctgc 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtaacccttaggctcaatttttcacaatttgcattttagcattgcatttcctccctgc 202
Query: 301 tgtggcagtgtatatctgtgatcccaacacttaaggctggtggggccggagcttgagagt 360
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggcagcgcatatctgtgatcccaacacttaaggctggtggggccggagcttgagagt 142
Query: 361 tcaagataaacccttgtagtagaccctttatctaaagaagcaacaacccccttcccccaa 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tcaagataaacctttgtagtagaccctttatctaaagaagcaacaacccccttcccccaa 82
Query: 421 acatca----tcctattgactgatactcaagtttcaggtccaacattatttgtccctttc 476
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 acatcagctctcctattgactgatactcaagtttcaggtccaacattatttgtccctttc 22
Query: 477 ttcttaaaagtga 489
|||||||||||||
Sbjct: 21 ttcttaaaagtga 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_f19.g1 MSMg01no500_f19.g1 CHROMAT_FILE:
MSMg01no500_f19.g1 PHD_FILE: MSMg01no500_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:59 2005
(584 letters)
>mm_chr9_65461094_65462077
Length = 984
Score = 1029 bits (532), Expect = 0.0
Identities = 571/596 (95%), Gaps = 20/596 (3%)
Strand = Plus / Plus
Query: 1 ttctttcaggaacttactcattcatcttagtgttaataaattaaatattcagcagctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttctttcaggaacttactcattcatcttagtgttaataaattaaatattcagcagctggg 248
Query: 61 catgatgctgcacacgtgtaatcccactattcaggaagtggaagcaggaggattaggagt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 249 catgatgctgcacacgtgtaatcccactattcaggaggtggaagcaggaggattaggagt 308
Query: 121 ccaagggttacacagtaagttccaagcctgggcagtttgcaagtttgaggctaccttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccaagggttacacagtaagttccaagcctgggcagtttgcaagtttgaggctaccttggg 368
Query: 181 ctcaaaacaaaacaaaacagaaaaacc------------cagttaaaagaaagcagaact 228
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 369 ctcaaaacaaaacaaaacagaaaaacccagtagtaataacagttaaaagaaagcagaact 428
Query: 229 gtgttagaaatagacagacaaattcagtactatagaattgctcaagaaggcttcttttga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtgttagaaatagacagacaaattcagtactatagaattgctcaagaaggcttcttttga 488
Query: 289 gctgagaaagtaatagatggctacaaagaacattctaaacagaggaaagggttatttatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gctgagaaagtaatagatggctacaaagaacattctaaacagaggaaagggttatttatt 548
Query: 349 tatttatttatttatttattttttattgtatttgagtacactgttgctctctttagacac 408
|||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 549 tatttatttattta--------ttattgtatttgcgtacactgttgctctctttagacac 600
Query: 409 accagaatcaggcatcagaactcattacagatgattgtgagccaacacgtggttgctagg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 accagaatcaggcatcagaactcattacagatgattgtgagccaacacgtggttgctagg 660
Query: 469 aattgaactcaggacctctggaaaagcaactagtactcttatcagctgagccatctctcc 528
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 661 aattgaactcaggacctctggaaaagcaactagtactcttatcagctgagctgtctctcc 720
Query: 529 agcccagaaaagggtttatttaaagtggtgatagggaagctttggatgtctgcaga 584
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 721 agcccagaaaagggtttatttaaaatggtgatagggaagctttggatgtctgcaga 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
