BAC Information

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BAC

Clone NameMSMg01-502F08
Chromosome9 (Build37)
Map Location 34,848,710 - 35,047,467
singlet/doubletdoublet
Overlap geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik
Upstream geneKirrel3
Downstream geneRpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502F08.T7 (MSMg01no502_f08.b1)MSMg01-502F08.TJ (MSMg01no502_f08.g1)
ACCAG577712AG577713
length745726
length of high quality
(start - end)
419 (31 - 449)495 (60 - 554)
definitionCHROMAT_FILE: MSMg01no502_f08.b1 PHD_FILE: MSMg01no502_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:20 2005CHROMAT_FILE: MSMg01no502_f08.g1 PHD_FILE: MSMg01no502_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,047,147 - 35,047,467)(34,848,710 - 34,849,204)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAAAAGGC
ACTGGTCTTCAGTCCAGTAGAGGGCAGAATGAGGTAGATTCTGATGTCAG
TGAAGAACTGCAGCCGTGACAGAGTAGATGAACTTGCCACCAGGGTGGCA
AGGCAGTGCCAACCTCCTTTTGGCTATCAGGCTGACACCATAACATGCCA
TCCACATTTGGGGTGGGTCTTTCCACCTTGAATAACCTGATCAAGAAGAT
GCCTTTCAAGGTGTGCCCAGGGGCTTGATTCCAGATTCTGTCATGCTGTC
ACATTGGCAACCAGTATTCACCATCACAGTACAATGATGAGCTTTCCTCT
GCTTATTACGCCTGGAGCAAGTTCAGCAGTTGAGGACCTCTAACCTGTCT
AAAGCTGTGGTTCTTTCTGACATAATGGCCATGTCCCCAAAGAGAAATCG
TTCCATCTCTTGAATTCAGCGAGACTGGGTCCAAGAAAAGGTTGAAGAAT
CCTAGAGTCTGGAGCTTGCCCCAAGGGAGATTGGTTGGAGACGTCTTAGA
TTTCATGCAGAGATTCTTCCTTCATCCCTCCCTCCTGGCACTGTGCACAG
TGTTCTCAAATGCAGTCCTCTGGCTGACTCTCTGAAGACATACTTACTGC
TGAGTTTAAGTGTCACCTGCCTACCCACTTGAACATGTACCTAACATTCC
TGAGCTTCTTCAGAGGAAATTGGGTTTTCTTATGGAACTTCTAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGACACTAAATGGGCACTGAACTTTGGAGGAAATACTGAA
AGGGGGCAAATATAAACAAAGCGGTGTGGGTGAGAGCTGCAGCGGGGTTT
CCAAGTAACTTAATTAAAAAGGTTCTCTGGCTCTCCTATCACGCAGGGGC
TCCATTGGCATGGCGAAGCCACAGAGAAAGGAGAAACACAGCTTTCCATG
CCATCAGCTACCCCTGAGACTCACCTCAGGCAGAGAAAAACTCACGTTAA
AGCAAGTGACGTGTTAAAGGGCATGGTAGCTGCCAAGAGTGTTCTAGGAA
GGATCAGAATCATAGATGGTACTGGAAGAGCCCAGTCTAATACCTGCACC
TGGAGAGGCGGTCTCCAGGCCTCCTCTCACTCTCTCTGCCCAGCCCCATC
CTCCTCGTCCTTCCTAGAGAGGAGGAATGAATGCCTCCGTATGCTTTAGT
CTCTTCGCTCTCCCCAGGAATCTGATATGAACAAGCAATAACACCTGCTT
CCCAGAGTTCAAGTTTCCCTAACCCCTCTGCCAAGCACTTGTAACTAGCT
CAGCTGCTCTTCCCGCTGTCCTTCCAAGTGAAGCAGCTGAGGCTTCCAAG
GCATCTGGGCTCCTCCCAAATTTGCCACTGACTGAGTCTCAGGNCATTTC
TCTACCTTGCTTTTTCCCTTTGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_f08.b1 MSMg01no502_f08.b1 CHROMAT_FILE:
MSMg01no502_f08.b1 PHD_FILE: MSMg01no502_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:20 2005
         (419 letters)



>mm_chr9_35046649_35047467
          Length = 819

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 99  tgaacttgccaccagggtggcaaggcagtgccaacctccttttggctatcaggctgacac 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tgaacttgccaccagggtggcaaggcagtgccaacctccttttggctatcaggctgacac 760

                                                                       
Query: 159 cataacatgccatccacatttggggtgggtctttccaccttgaataacctgatcaagaag 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cataacatgccatccacatttggggtgggtctttccaccttgaataacctgatcaagaag 700

                                                                       
Query: 219 atgcctttcaaggtgtgcccaggggcttgattccagattctgtcatgctgtcacattggc 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atgcctttcaaggtgtgcccaggggcttgattccagattctgtcatgctgtcacattggc 640

                                                                       
Query: 279 aaccagtattcaccatcacagtacaatgatgagctttcctctgcttattacgcctggagc 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaccagtattcaccatcacagtacaatgatgagctttcctctgcttattacgcctggagc 580

                                                                       
Query: 339 aagttcagcagttgaggacctctaacctgtctaaagctgtggttctttctgacataatgg 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagttcagcagttgaggacctctaacctgtctaaagctgtggttctttctgacataatgg 520

                                
Query: 399 ccatgtccccaaagagaaatc 419
           |||||||||||||||||||||
Sbjct: 519 ccatgtccccaaagagaaatc 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_f08.g1 MSMg01no502_f08.g1 CHROMAT_FILE:
MSMg01no502_f08.g1 PHD_FILE: MSMg01no502_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:20 2005
         (495 letters)



>mm_chr9_34848510_34849404
          Length = 895

 Score =  911 bits (471), Expect = 0.0
 Identities = 489/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacactaaatgggcactgaactttggaggaaatactgaaagggggcaaatataaacaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 201 ttgacactaaatgggcactgaactttggaggaaagactgaaagggggcaaatatagacaa 260

                                                                       
Query: 61  agcggtgtgggtgagagctgcagcggggtttccaagtaacttaattaaaaaggttctctg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagtgtgggtgagagctgcagcggggtttccaagtaacttaattaaaaaggttctctg 320

                                                                       
Query: 121 gctctcctatcacgcaggggctccattggcatggcgaagccacagagaaaggagaaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctcctatcacgcaggggctccattggcatggcgaagccacagagaaaggagaaacac 380

                                                                       
Query: 181 agctttccatgccatcagctacccctgagactcacctcaggcagagaaaaactcacgtta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 agctttccatgccatcagctacccctgagactcacctcaggcagagaaaaactcacatta 440

                                                                       
Query: 241 aagcaagtgacgtgttaaagggcatggtagctgccaagagtgttctaggaaggatcagaa 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcaagtgacgtgttaaagtgcatggtagctgccaagagtgttctaggaaggatcagaa 500

                                                                       
Query: 301 tcatagatggtactggaagagcccagtctaatacctgcacctggagaggcggtctccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatagatggtactggaagagcccagtctaatacctgcacctggagaggcggtctccagg 560

                                                                       
Query: 361 cctcctctcactctctctgcccagccccatcctcctcgtccttcctagagaggaggaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcctctcactctctctgcccagccccatcctcctcgtccttcctagagaggaggaatg 620

                                                                       
Query: 421 aatgcctccgtatgctttagtctcttcgctctccccaggaatctgatatgaacaagcaat 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgcctcggtatgctttagtctcttcgctctccccaggaatctgatatgaacaagcaat 680

                          
Query: 481 aacacctgcttccca 495
           |||||||||||||||
Sbjct: 681 aacacctgcttccca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)