BAC Information

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BAC

Clone NameMSMg01-502P13
Chromosome9 (Build37)
Map Location 58,683,180 - 58,683,458
singlet/doubletsinglet
Overlap geneHcn4
Upstream geneArid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik
Downstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P13.T7 (MSMg01no502_p13.b1)MSMg01-502P13.TJ (MSMg01no502_p13.g1)
ACCAG578198AG578199
length713694
length of high quality
(start - end)
279 (359 - 637)274 (355 - 628)
definitionCHROMAT_FILE: MSMg01no502_p13.b1 PHD_FILE: MSMg01no502_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005CHROMAT_FILE: MSMg01no502_p13.g1 PHD_FILE: MSMg01no502_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCTCTAAACGACTCACTATTACGNTACCGGGCGCGGAANNCNNNAG
TTTGCAACCAGCGGGGGGNAGCNCANATCTGGAATCTTTTGATTGGAAAC
AGAAGGATCAGCAGTTCAGTGCTTTTCTTAGCTACATAGGAAGTTTGAGG
TCACCCTAGGCTCTATAAGATCCATGTTAAAACACAAAGAGAACAAACAA
CAACATGTGAAGGTTTGGGCACAGCCTCTCAGTTCATATTTTGTCTCATG
AATTCTCAGGGCAGGAAGTGTAGGAATCTGGTTTCACATTAAATTGGAAT
AAAATTTNATAGTTTGGCAATACCTTTGCAGCTTTATTAATCCTATTAAA
AGTCAGTTTACATGCAGTTCTTTTCTTTCTAATTACAGTGGTCTTGCATC
TTATTTGCTTAGCAACATTATAAACTTGAAGACAAAGGTGACATTGTATC
TCTTGTAAAATGCATATTATATTATTAGTGCTTATAAACACTAGTTGGCC
TGAGCAGGTATTAAAACACAATCTTCTACAGTAGTCTTTTTCAGTCACTC
AAAAAAGAGGGAGGAATCTTATGTCTATAATGATCTTTTAGGTTGAACCA
CATGCAATTGTTGGTTGGTCATTTTTTTCTATAAAAATGTTTGTTGCAAG
TAACCTGGTGCTTGTTGGGAATTGGTTCTAATGCTTTGTCTCCCAAAAGC
TGTGCTTCCAGAT
CCTGGAGGATGCCTGTTTCCTACCTGGGGTNGAANTANAGAAGGTTACGA
GGACGGGGTTCCCCCCCTTTCCCCACACAGGTTGTTGTAAATCAGAATTA
TGACACCCAGGCTCAGAGGGCACTGAAGGAGCCCTTGCTCAGACTCCTCT
TTAAGACAGTTTTCCTGGGGAGAACAAGAGATCCATCTAGCCCCAGGTCC
TCGGAGCCCACATTCCCCAGTGGGATCCTTACTGTTCAACTAACTCACCT
CAGCAAAATCAGGGTGTACAGTAAAATTTTGCTTTATGGGTCCTCCCTTT
CATAGCTACTGCAGTCCAAACCCGATGGAGACATTTTCTCCTTTTCCCCG
TACGTAGGCCTTTTTGTAAAGGCAGGTGAGGCCAGGTACCTGGCTTCCCT
TGGGGGCAGGGCGTTGTTCACGTGCTCTACTACAACAATGCTCTATTTTT
GTCCCAGGCTCCTGAATCAGGAGGCTCCTGGGGGAGTGGTACTTGAGTCT
TTGTTCTTGTGTGTAGCTCTAAGTTTGTTAACTGTTGGTCCCCTCCCCAT
TTTCTTTAAATCTTCTCTTGTTGAGTGAAACTTGAAGATGCTGGGTGGCT
AGGCTGAGGGAGTTCAGCATCCTGAATACTTGGTAGTGTTGTTGAGCAAA
CAGATGTCCCTTGCTGTGCTGTTTTGGTGTGTGTATGTGTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p13.g1 MSMg01no502_p13.g1 CHROMAT_FILE:
MSMg01no502_p13.g1 PHD_FILE: MSMg01no502_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:07 2005
         (274 letters)



>mm_chr9_58682987_58683660
          Length = 674

 Score =  455 bits (235), Expect = e-132
 Identities = 265/279 (94%), Gaps = 7/279 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggcctttttgtaaaggcaggtgaggccaggtacctggcttcccttgggggcagggcgt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 194 taggcctttttgtaagggcaggtgaggccaggtacctggcttcccttgggggcagggtgg 253

                                                                       
Query: 61  tgttcacgtgctctactacaacaatgctctatttttgtcccaggctcctgaat------- 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 254 tgttcacgtgctctactacaacaatgctctatttttgtcccaggctcctgaatggtagat 313

                                                                       
Query: 114 caggaggctcctgggggagtggtacttgagtctttgttcttgtgtgtagctctaagtttg 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 314 caggaggctcctgggggagtggtacttgagtctttgttcttgtgtgtagctctaagttcg 373

                                                                       
Query: 174 ttaactgttggtcccctccccattttctttaaatcttctcttgttgagtgaaacttgaag 233
           |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 374 ttaactgttgctcccctccccattttctttaaatcttctcttgtcgagtgaaactttaag 433

                                                  
Query: 234 atgctgggtggctaggctgagggagttcagcatcctgaa 272
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgctgggtggctaggctgagggagttcagcatcctgaa 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)