BAC Information

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BAC

Clone NameMSMg01-504A22
Chromosome9 (Build37)
Map Location 21,370,219 - 21,370,881
singlet/doubletsinglet
Overlap geneCarm1
Upstream gene2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611
Downstream geneYipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504A22.T7 (MSMg01no504_a22.b1)MSMg01-504A22.TJ (MSMg01no504_a22.g1)
ACCAG579027AG579028
length760802
length of high quality
(start - end)		670 (48 - 717)118 (150 - 267)
definitionCHROMAT_FILE: MSMg01no504_a22.b1 PHD_FILE: MSMg01no504_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:32 2005CHROMAT_FILE: MSMg01no504_a22.g1 PHD_FILE: MSMg01no504_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTATGTTTACCAGGCTAGCCTCGAATCACATGTACTACCATG
CTTAGCCTTCTCCTCTCCATTTAAAAAAAAAAAAAAAAGTTTTTTGAGAT
AGGATCTCACTCTATAGTCCACAGTAGCCTGGAATTCATTTATGCAGCCC
AGGCTGACCTTGAACTCACCTCAGCCGTCCTGTCTTAGCTTCCCAAATGG
TGGGTTTAGGGAGTGAGTCATCACCTGAGTCCTTTCTTGGATTATCCCAT
CCTGTATCTCTTTTCTGTTCCACATTTCATAACCTGAGGCAACCATGGAA
AAGAAGGCTGGGTTGGTTTGTGGCAGATCATACCCTGGAGCTTTTCTGAA
ACCTGGGGCTGCAAGCTTCTGCTGTAGCTCCCTCACCAGTGGCTGCATTG
ACATTGCAGGGAACATTTACCTGCTTGAAGGATCTATGGGCATTTTCTTC
ATCTGTAGCAGGCCTGTGGTTATAGGGACACTTTAATGCTACTTCCTCAT
GTAGGCTTCAGGTGCTCCTTAGAGGACCCTTGCTCTGCAGTTCTATCCTT
ATGGTATGGGATGTCTTCTCTATCTAGCCACAGGATTGCCCTGGACCCAT
CTCTAGAAGGGAGTTGGGAGATGGGAAGGCTAGGATGTGCAAAGGCCAGT
CCAAGCCTTCCTTTGGATCTAGAGGATTGGGTGTGCCGCACTGAGCAGGG
ATGCTGCACA

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
AACTTGCCTGGTCTACATCTACAGAGTGAGTTCCAGGGCAGCCATGGCAA
CATAGAGAAACTTTATATAAAAAAAAACAAGCCCCACGCGGGTGGGGGTG
GAGGGGGGGGGAAGNNNNNNNNTTTNTGATTTGNTTTNTTTNTTNTGTTT
TTTTNNNNNTTTTTTTTTTTTTTTTNTNTTTTTTNTTTTTTTTNTTTTTT
TTTTTTTTTNTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTT
TTTTTTTNNNTTTTNNNTTTNTTTTTTTTTTTTTTNNTTTTTTTTTTTTT
TNNTTTTTTTTNTTTTTTTTTTTNTNNNTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTNTTNNNTTTT
TTNNTTTTTTTTTCCNTTTTCCTCTTTTTTTCTNTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTNNTNNTTTTTTTTTTTTTTTTTTTTTTTTCT
TTTTTTTTNTNTTTTTTTTTTCTGCTTTTTTTTCTTTCTCTTTNCCCCTC
CTCTTCTTTTTTCCTTTTTTTCCTTTCCTCTTTTTTCCCGCTTTCCTTNC
TCCTTCTTTCCTTTTTTTCCGCTTGCTTGCTTCTCTGGTTTCCGTGGTCG
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_a22.b1 MSMg01no504_a22.b1 CHROMAT_FILE:
MSMg01no504_a22.b1 PHD_FILE: MSMg01no504_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:32 2005
         (670 letters)



>mm_chr9_21370012_21371081
          Length = 1070

 Score = 1239 bits (641), Expect = 0.0
 Identities = 659/667 (98%), Gaps = 4/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatgtttaccaggctagcctcgaatcacatgtactaccatgcttagccttc 63
           ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcactatgtagaccaagctagcctcgaatcacatgtactaccatgcttagccttc 267

                                                                       
Query: 64  tcctctccatttaaaaaaaaaaaaaaaagttttttgagataggatctcactctatagtcc 123
           | ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 268 ttctctccatttaaaaaaaaaaaa----gttttttgagataggatctcactctatagtcc 323

                                                                       
Query: 124 acagtagcctggaattcatttatgcagcccaggctgaccttgaactcacctcagccgtcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagtagcctggaattcatttatgcagcccaggctgaccttgaactcacctcagccgtcc 383

                                                                       
Query: 184 tgtcttagcttcccaaatggtgggtttagggagtgagtcatcacctgagtcctttcttgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtcttagcttcccaaatggtgggtttagggagtgagtcatcacctgagtcctttcttgg 443

                                                                       
Query: 244 attatcccatcctgtatctcttttctgttccacatttcataacctgaggcaaccatggaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attatcccatcctgtatctcttttctgttccacatttcataacctgaggcaaccatggaa 503

                                                                       
Query: 304 aagaaggctgggttggtttgtggcagatcataccctggagcttttctgaaacctggggct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagaaggctgggttggtttgtggcagatcataccctggagcttttctgaaacctggggct 563

                                                                       
Query: 364 gcaagcttctgctgtagctccctcaccagtggctgcattgacattgcagggaacatttac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcaagcttctgctgtagctccctcaccagtggctgcattgacattgcagggaacatttac 623

                                                                       
Query: 424 ctgcttgaaggatctatgggcattttcttcatctgtagcaggcctgtggttatagggaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgcttgaaggatctatgggcattttcttcatctgtagcaggcctgtggttatagggaca 683

                                                                       
Query: 484 ctttaatgctacttcctcatgtaggcttcaggtgctccttagaggacccttgctctgcag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctttaatgctacttcctcatgtaggcttcaggtgctccttagaggacccttgctctgcag 743

                                                                       
Query: 544 ttctatccttatggtatgggatgtcttctctatctagccacaggattgccctggacccat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttctatccttatggtatgggatgtcttctctatctagccacaggattgccctggacccat 803

                                                                       
Query: 604 ctctagaagggagttgggagatgggaaggctaggatgtgcaaaggccagtccaagccttc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctctagaagggagttgggagatgggaaggctaggatgtgcaaaggccagtccaagccttc 863

                  
Query: 664 ctttgga 670
           |||||||
Sbjct: 864 ctttgga 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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