Query= MSMg01no504_c02.b1 MSMg01no504_c02.b1 CHROMAT_FILE:
MSMg01no504_c02.b1 PHD_FILE: MSMg01no504_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:38 2005
(515 letters)
>mm_chr9_31138961_31139875
Length = 915
Score = 857 bits (443), Expect = 0.0
Identities = 475/486 (97%)
Strand = Plus / Minus
Query: 5 gaattcatgttttcaggcctgtgtaagtgcttgtctctacccactgaaccatctcaccag 64
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 710 gaattcatgtcatcaggcctgtgtaagtgcttatctctacccactgaaccatctcaccag 651
Query: 65 ccctggttttaaaactgtcactttctttttctgctaatttaacccaacacagacagtaac 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 650 ccctggttttaaaactgtcactttctttttctggtaatttaacccaacacagacagtaac 591
Query: 125 tcatactttgctggttgatacccttgtcttctgcaatattgagggttctctccagagtgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcatactttgctggttgatacccttgtcttctgcaatattgagggttctctccagagtgc 531
Query: 185 cacacacagcaggcaccctccaccaagctttatctcgagcccttttcgcattttttaaat 244
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 530 cacacacagcaggcaccctccaccgagctttatcttgagcccttttcgcattttttaaat 471
Query: 245 tattgagaaatcatttaaacatgtttttacgattggtttcttgcaattaagctctgttgc 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 470 tattgagaaatcatttaaacatgtttttacgattggtttcttccaattaagctctgttgc 411
Query: 305 tgcagttctccacctgcatcgtgaggccggactacaacacactgctccgctttcacatgg 364
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 410 tgcagttctccacctgcatcgtgaggccggactacaacacactgctccactttcacatgc 351
Query: 365 gaacatgggagtgattacagagacctcttccatccaactgcttcctttttatctgttttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaacatgggagtgattacagagacctcttccatccaactgcttcctttttatctgttttg 291
Query: 425 gttcactggttggntgggtcttctctctctctctctctctctctctctctctctctctct 484
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gttcagtggttggttgggtcttctctctctctctctctctctctctctctctctctctct 231
Query: 485 ctctct 490
||||||
Sbjct: 230 ctctct 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_c02.g1 MSMg01no504_c02.g1 CHROMAT_FILE:
MSMg01no504_c02.g1 PHD_FILE: MSMg01no504_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:38 2005
(646 letters)
>mm_chr9_30979273_30980318
Length = 1046
Score = 1210 bits (626), Expect = 0.0
Identities = 641/650 (98%), Gaps = 8/650 (1%)
Strand = Plus / Plus
Query: 1 tcctcttctgacagctggcgactgcctgctccaggcgagctcttacctccttgactaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcttctgacagctggcgactgcctgctccaggcgagctcttacctccttgactaacg 260
Query: 61 tgtgccagcgctggtgcttctcacacacctccatccgctcttggtggaaaaactggcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgccagcgctggtgcttctcacacacctccatccgctcttggtggaaaaactggcagt 320
Query: 121 tatctggaactagcaggacatcacttacaaattcacccactgggagaaacaaaaagcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctggaactagcaggacatcacttacaaattcacccactgggagaaacaaaaagcctt 380
Query: 181 tgtcagaagcaaatctggttgtgcttcagggtgaacacagcc----ttcagttccgatcc 236
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tgtcagaagcaaatctggttgtgcttcagggtgaacacagccagccttcagttccgatcc 440
Query: 237 tccgattaatgtttacaggtcgctgcacatccaggcgtacatacgcacgcgtggacactg 296
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tccgattaatgtttacaggtcgctgcacatccaggcatacatacgcacgcgtggacactg 500
Query: 297 aaggactcccctatcccacctgcggcttgggcagtaacatttcctggctacaatcctgtg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggactcccctatcccacctgcggcttgggcagtaacatttcctggctacaatcctgtg 560
Query: 357 caggaactactgcaatacatttctgggagatgtgacaggatccctgtccatgaccacctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaactactgcaatacatttctgggagatgtgacaggatccctgtccatgaccacctc 620
Query: 417 aagtagacacacctcatgcatgaccagtgtgctgaacctttcttcacaaaactattagaa 476
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtagacacacctcatg----accagtgtgctgaacctttcttcacaaaactattagaa 676
Query: 477 ccactgatacagataaaattttaagtggatgattaatcacaaaagagcaaggaacctttt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccactgatacagataaaattttaagtggatgattaatcacaaaagagcaaggaacctttt 736
Query: 537 cagtgggaaactaccaaaacttagtgaccacgataacgttccaattcaggacaagctgac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cagtgggaaactaccaaaacttagtgaccacgataacgttccaattcaggacaagctgac 796
Query: 597 atgtgcaatgccctcagagtgtatcagtatcatctacagcatgcctgcca 646
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atgtgcaatgccctcagagtgtatcagtatcatctacagcatgcctgcca 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
