BAC Information

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BAC

Clone NameMSMg01-504O01
Chromosome9 (Build37)
Map Location 39,261,294 - 39,261,667
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1
Downstream geneOlfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504O01.T7 (MSMg01no504_o01.b1)MSMg01-504O01.TJ (MSMg01no504_o01.g1)
ACCAG579650AG579651
length636762
length of high quality
(start - end)
---372 (84 - 455)
definitionCHROMAT_FILE: MSMg01no504_o01.b1 PHD_FILE: MSMg01no504_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:38 2005CHROMAT_FILE: MSMg01no504_o01.g1 PHD_FILE: MSMg01no504_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGGGTCAAATTGCGGCCAAACACCCATCCGAGAGGACCGGGAATCCTCTT
TTTTTTCCCCCCCCCCCCCCNNCCTTTTTTCTGGGGGGGGGCCTTTTTAT
TCCTTCAATCTTACACATCATTCCTCTTTATTTTTACACTTAAAAACCAT
CTCCTCGTATCTNNNNNTTAGACTTTCTGCAATGGTGCTTAAAAAAAGTT
TTTGGAAAAAGGTTTCCTTGGAAACCCCACTTTGGCCTAACCCTTGGGGG
AAAAGCAAAGAAAACCAAATACCTACCAAAGCCCCAGAAAAGAACAATTT
TTTTGGGAAACTTTAATTTTGGCCAGTCCCCCCCCAAAAAAACCCGGGGG
CCGGAACCCATTAAACGGGGTTTTTAAAGGGGGAACCTTTTAGGAAAAAA
AAGGGAAAAATTTTTAAACTAAAGGGAAAAAGGGAAAAAGGTTCCCCACC
CCTCTAAAACAGGGAATTTTTAAAAAAGGAAATTGGTCCCCAAGTCCTTT
TTTTTTTCCCCCCAAAAAAAAAAGGGGTTGAAACACACCCGGAAAAAAAA
GTCCCCCCTCATCCTTATATTCCTCCCCGGAAAAAAATATTACTCCCCAA
AATTTTATTTAGGGGGGTGGGGCAAAAAGGAAATTA
CTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAACTTCCCTTAATA
TTTCATAAAAGACATAAGAAAGTTATTAAGGATGTAATAAGCTTTAAGTG
TTGTTCTAGGACCTGGACAGCAATTATTAGTGACAACAATTATCGGCTTG
TATATGTCAGTCTCAATAATTTTGACTAAAATGGGGAGGTACAAACTTAA
GAATCAATAGATATACCACTAGTATCCTGGATCAGACATGGTCAGTACAC
AGAAGTTTCTATGACATAGATTGTAAATGACCATAGTGATATAATAAAGT
AATGTACTAAAATAATATACTACAGAAGGAAACCAAATAAAGTCCAATAA
AGAAGAGGACAGTAAGTGGATTTTCAAGGGTCATCTCCAAAATAGAAATC
ACAAGTATCATAACTTTTAATTTTTAAGGGGTTTCCTTTTTCCCGGTTGG
AAANAATTTCCGCCTTCTTTCCTTCACGTCGCTTTTACTCCCTTTCTTCT
TATCTCTTTTTTGTCTCGACATTTTTTTGCTAGGTTATTCTTTTCTTTTC
TTTTTTCCTATCCCCGCCCTCCCCTCCCCTTTTCCATTTCCTCCCTGCTC
TTACACCCCCCCGTGTTTACTACTTTTATTCTTTCCCTCCGCCCCCGCCC
TTTTATCTTTACCCCCGCCCCCACCATTCCCTTTGGCCGCCCCTCCACCT
TCTCTTTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_o01.g1 MSMg01no504_o01.g1 CHROMAT_FILE:
MSMg01no504_o01.g1 PHD_FILE: MSMg01no504_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:38 2005
         (372 letters)



>mm_chr9_39261094_39261867
          Length = 774

 Score =  673 bits (348), Expect = 0.0
 Identities = 367/376 (97%), Gaps = 6/376 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaacttcccttaatatttcataaaagacataagaaagttattaaggatgtaataagct 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 574 agaaacttcccttaatatttcataaaagacattagaaagttattaaggatgtaataagct 515

                                                                       
Query: 61  ttaagtgttgttctaggacctggacagcaattattagtgacaacaa----ttatcggctt 116
           ||||||||||||||||||||||||||||||| ||||||||||||||    |  || ||||
Sbjct: 514 ttaagtgttgttctaggacctggacagcaataattagtgacaacaaaaact--tctgctt 457

                                                                       
Query: 117 gtatatgtcagtctcaataattttgactaaaatggggaggtacaaacttaagaatcaata 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtatatgtcagtctcaataattttgactaaaatggggaggtacaaacttaagaatcaata 397

                                                                       
Query: 177 gatataccactagtatcctggatcagacatggtcagtacacagaagtttctatgacatag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gatataccactagtatcctggatcagacatggtcagtacacagaagtttctatgacatag 337

                                                                       
Query: 237 attgtaaatgaccatagtgatataataaagtaatgtactaaaataatatactacagaagg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 attgtaaatgaccatagtgatataataaagtaatgtactaaaataatatactacagaagg 277

                                                                       
Query: 297 aaaccaaataaagtccaataaagaagaggacagtaagtggattttcaagggtcatctcca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaccaaataaagtccaataaagaagaggacagtaagtggattttcaagggtcatctcca 217

                           
Query: 357 aaatagaaatcacaag 372
           ||||||||||||||||
Sbjct: 216 aaatagaaatcacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 774
Length adjustment: 9
Effective length of query: 363
Effective length of database: 765
Effective search space:   277695
Effective search space used:   277695
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)