Query= MSMg01no506_o24.b1 MSMg01no506_o24.b1 CHROMAT_FILE:
MSMg01no506_o24.b1 PHD_FILE: MSMg01no506_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:18 2005
(602 letters)
>mm_chr9_68433535_68434536
Length = 1002
Score = 1075 bits (556), Expect = 0.0
Identities = 596/620 (96%), Gaps = 19/620 (3%)
Strand = Plus / Plus
Query: 2 ggaattcataatgaatttctgttctctggcttctgttatttagcacatttcagactagag 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ggaattcataatgaatctctgttctctggcttctgttatttagcacatttcagactagag 242
Query: 62 gggaaacataaacatttccatgccacatctaatacaactataaggtcattacacattctg 121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 243 gggaaacataaacatttccatgccacatctaatacaattataaggtcattacacattctg 302
Query: 122 tagcacaaaacagctgctccaaggattcttattagaaccgagcagagctttatttgtttg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tagcacaaaacagctgctccaaggattcttattagaaccgagcagagctttatttgtttg 362
Query: 182 ggacc-aaaaaaaaattcatttaaattatgatttaatgagactgttaagtgttcatcacc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggaccaaaaaaaaaattcatttaaattatgatttaatgagactgttaagtgttcatcacc 422
Query: 241 aagtgactacttagtaaagctgcgtggggcttggctgttcaagatcctgagaggttaaat 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 423 aagtgactacttagtaaagctgcgtggggcttggctattcaagatcctgagaggttaaat 482
Query: 301 gaactctttcctacccctgccttacac----acagacagacagacagacagacacagaga 356
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 483 gaactctttcctacccctgccttacacacagacagacagacagacagacagacacagaga 542
Query: 357 gacagagacagagagagagggag--------------agagacagaaagagacagagaca 402
|||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 543 gacagagacagagaaagagggagagagacagagagacagagacagaaagagacagagaca 602
Query: 403 gagagacacacagcgaaatccatatgttttaatccaaacaatattttctcctaccttaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gagagacacacagcgaaatccatatgttttaatccaaacaatattttctcctaccttaaa 662
Query: 463 aataaccttataaatatagacaactttaaatttttatggcttagttgacttgttagttga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aataaccttataaatatagacaactttaaatttttatggcttagttgacttgttagttga 722
Query: 523 atatacaaggagtctatgcaaagctttttggctcttggggactggggaatggtaaagtac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atatacaaggagtctatgcaaagctttttggctcttggggactggggaatggtaaagtac 782
Query: 583 ttgctatccaagccttaggg 602
||||||||||||| ||||||
Sbjct: 783 ttgctatccaagcattaggg 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_o24.g1 MSMg01no506_o24.g1 CHROMAT_FILE:
MSMg01no506_o24.g1 PHD_FILE: MSMg01no506_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:18 2005
(326 letters)
>mm_chr9_68601984_68602709
Length = 726
Score = 565 bits (292), Expect = e-165
Identities = 315/328 (96%), Gaps = 10/328 (3%)
Strand = Plus / Minus
Query: 1 agaagagaggactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agaagagaggactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtc 638
Query: 61 tacagagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaacc-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tacagagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaa 578
Query: 119 aaaaaaaaaaaaaaaaaaaaaagtagaaaagaagagagggaggaagggaggagagaaagc 178
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 577 aaaaaaaaaaaaaaaaaaaaaagtagaaaagaagag--------agggaggagagaaagc 526
Query: 179 aagcggaaattttaaactataatgtattcaaacgatgtgctcagcatctccaaggccttt 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aagcggaaatgttaaactataatgtattcaaacgatgtgctcagcatctccaaggccttt 466
Query: 239 ggttgcctacctggggtgagggtgcggtgggtgaataaaatggacaagggaataaatgga 298
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 465 ggttgcctacctggggtgagggtggggtgggtgaataaaatggacaaggaaataaatgga 406
Query: 299 tccaaagctctagattcttctctaaagt 326
||||||||||||||||||||||||||||
Sbjct: 405 tccaaagctctagattcttctctaaagt 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
