AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCAGGATCCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGATTATTCGATTT
TCTGGAGCACACCTTCTTGAGTTCTTTATATATATTGTATATTAGTCCCC
TATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACCGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTAT
GGGGTCCCATTTATTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACT
TTCTCCTCTATAATTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGCATCAATTCTCA
TTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTAAAAATG
CTGTCTTTTTTCCACTGGATGGTTTTTAGCTCCCTTGTCAAAGACCAAGT
GACCATAGGTGTATGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGG
TCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTACAGCTTTAGGTCTGGCATGGTGATTCCACCAGAGGTTCTTT
TACCACTGAGAAGAGCTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATT
AATCTGCCGAATGGCCTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACCAAGCTCCTGTCCCTGTAGCAGT
TAGAATCTGAGAGAAAGAGATGAAATTAAACCAATAATAACGCACTTTGT
TATTAACAGATGGGACAAGTCTAATTGAATGACTTGAAAGTTAAAAAACA
AAAATGAAGCTGAGGGAGACACAGTGACTTTGCAAAGGTCAGTTGGAGAA
ATGAGTCAGGAAGGCATATGGTGTAACATGTGTTCTACGGAGCAGGAAGA
GGACTAGGTGGAGGTGCTGTCCCCACTGTCTTGGAGTTGTGACGTATCAG
AACCTCCACCGGTGCCTCTGTATCAGAGGGGTGGCAGCAGGCACACACCC
CGATTTTGTAATCATTACGAGAAACCAGGCACATGGCACACTTAGCACTC
AATAAACGCTACTTGTCACCCCGTCAATATTGACAGTTACTACTGCTAAA
AATATTTTTCCTTAACAGCAAGGCCAATGCTTTTATCTCTGCATTCCACT
GCCTTGATACCATTTCAGTTTTTTCCCTTCTTTTCTTCCTAACCATAAGA
AGTTTCCTAGAAAGTAGGTCAGACTTCAGCAAACTCTCGGCACTGTAGCT
TCTAGATAAAAGAGGGAGCATAGGAGGCTTTTCAGCAGCTCTGGGTGCCC
ATCCAGGCTTCCAGTGGATGACAAAATATTTCCATGAGGATTTATTTAAT
TTTGTCCCCAGGCTTGTN

Query= MSMg01no507_c08.g1 MSMg01no507_c08.g1 CHROMAT_FILE:
MSMg01no507_c08.g1 PHD_FILE: MSMg01no507_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:35 2005
         (638 letters)



>mm_chr9_52546077_52547114
          Length = 1038

 Score = 1210 bits (626), Expect = 0.0
 Identities = 635/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagctcctgtccctgtagcagttagaatctgagagaaagagatgaaattaaaccaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagctcctgtccctgtagcagttagaatctgagagaaagagatgaaattaaaccaata 260

                                                                       
Query: 61  ataacgcactttgttattaacagatgggacaagtctaattgaatgacttgaaagttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataacgcactttgttattaacagatgggacaagtctaattgaatgacttgaaagttaaaa 320

                                                                       
Query: 121 aacaaaaatgaagctgagggagacacagtgactttgcaaaggtcagttggagaaatgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaaaatgaagctgagggagacacagtgactttgcaaaggtcagttggagaaatgagt 380

                                                                       
Query: 181 caggaaggcatatggtgtaacatgtgttctacggagcaggaagaggactaggtggaggtg 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaaggcatatggtgtaacgtgtgttctacggagcaggaagaggactaggtggaggtg 440

                                                                       
Query: 241 ctgtccccactgtcttggagttgtgacgtatcagaacctccaccggtgcctctgtatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtccccactgtcttggagttgtgacgtatcagaacctccaccggtgcctctgtatcag 500

                                                                       
Query: 301 aggggtggcagcaggcacacaccccgattttgtaatcattacgagaaaccaggcacatgg 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 aggggtggcagcaggcacacaccccggttttgtaatcattacgagaaaccaggcacatgg 560

                                                                       
Query: 361 cacacttagcactcaataaacgctacttgtcaccccgtcaatattgacagttactactgc 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacttagcagtcaataaacgctacttgtcaccccgtcaatattgacagttactactgc 620

                                                                       
Query: 421 taaaaatatttttccttaacagcaaggccaatgcttttatctctgcattccactgccttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaaatatttttccttaacagcaaggccaatgcttttatctctgcattccactgccttg 680

                                                                       
Query: 481 ataccatttcagttttttcccttcttttcttcctaaccataagaagtttcctagaaagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataccatttcagttttttcccttcttttcttcctaaccataagaagtttcctagaaagta 740

                                                                       
Query: 541 ggtcagacttcagcaaactctcggcactgtagcttctagataaaagagggagcataggag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtcagacttcagcaaactctcggcactgtagcttctagataaaagagggagcataggag 800

                                                 
Query: 601 gcttttcagcagctctgggtgcccatccaggcttccag 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcttttcagcagctctgggtgcccatccaggcttccag 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)