BAC Information

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BAC

Clone NameMSMg01-507G05
Chromosome9 (Build37)
Map Location 83,028,468 - 83,029,056
singlet/doubletsinglet
Overlap geneHmgn3
Upstream geneLOC100039085, Irak1bp1, Phip, LOC100039144
Downstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507G05.T7 (MSMg01no507_g05.b1)MSMg01-507G05.TJ (MSMg01no507_g05.g1)
ACCAG581551AG581552
length762772
length of high quality
(start - end)
368 (329 - 696)608 (74 - 681)
definitionCHROMAT_FILE: MSMg01no507_g05.b1 PHD_FILE: MSMg01no507_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:55 2005CHROMAT_FILE: MSMg01no507_g05.g1 PHD_FILE: MSMg01no507_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGATAATCCGCGGAA
TTCATTCTGTAGTTCGGAAAAATGTCCAACTCACAGACAGCCATCTGCCT
CTACTGTCTGGGTTGCTGGGATTAAAGCTTATACCACTAATGCCTTGGTG
ATTATAGCGTTGCTTTTAGGAGCCTTGCTGACCCAGGCTGCAACATCACT
GAAAAGTTCCACCCCAGCATGATTTACAACTCTGAATGCCTGAGTCACTA
GAGTCCCCTGCACAGTACCGGTCAGTCAGCTACACCACTCAATGGAAGAG
TCCTCTCCTCCATTGCTGGTCCCTGATTCATGGCTTAAAGGTGAGTCTTG
TAAGTTTCATGAGTTTCTTGAGTCTTAAAGTAGGTTGTTTGTTTGTTTGT
TTGTTTGTTTGAGTTTCACGAATCTGGTGAACCTTTCCTCTGAGAGGGAA
TATTTCAATCTAGAGCATACAACTACACAAGAAGAAGCAACATATCACTA
TAGATTGCATGTGGAGACAGGTAAGAGAATCCAGATAGCTGTCAAACCAG
ACATTGGCAGGATTTGCAAAATGAATAGTAATGCCATTCTATATATTTTT
TGTGTTTTAAAAGCAGAACTATTCTTCAAAAGTGTTGTTTATGTTACTAG
GAAATTGGTCTTTTTTGTTATTTTTCAATGAGCAAATACAAAAATAGTTT
CAAAATCTGTCTCAGTTTTTAACAGCAATCAATAGATGTACACACAAAAA
GAGCTTGGATGC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCAAATCCCACTGTAGTTGCTGCCG
AAGGTATTTACGGACTCCTGTCTTCTTACATCTTATGAGCGTGCTCAGGA
GCAGCCTTGTAGGTGTGCCCAAGAGAAACGCATGCTTGGCCACACATACA
GAAAGTGACACTTACATTCGGAAGTAGGGAAATAGAGAAAATGGCTTCCA
TCTTTAAAATGGAATTGATATCAGTAATGAACATGGGCATCTGTAGTATT
GTTCAGATTTAAATAACTAACAGTATTGAGTGCCTGGCTGTGCCAGGTTT
GAGCTGTGGGTTTTATGCTCTTTGGGCTCTATAGTTAAGTGAAGCAGTGT
TATGAGAAATAAGTGCATAGAGGACGTGTTATACTGCAGTTTCATGAAAA
ACACATGTTTTTCTGTCAATGCGACATTCGGGGACTTCACATTGCTTTAT
AACCTTAATCCCCTCAGCCCCCCCCCCCCCAATCAGGTCCACTCATCTTC
ATCTTATACACTGAAGCACCAGCCCCTGACACTTTCCCAAGGCCCTTGTG
AGCTGCGGGGAATTCAGTTCTAGAGGCTCCAGAGCCTGTGATCTCAACCA
TGGGAAGGGAATATTGGAATTCTCTGAGTTGAAGGTCACTCCTCTGGGTC
ACAAGGCTAGAAAGGTAGAAGACAACATTCTAACCCATAATTTTTTTTCT
TTTAACACTATACCATCAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_g05.g1 MSMg01no507_g05.g1 CHROMAT_FILE:
MSMg01no507_g05.g1 PHD_FILE: MSMg01no507_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:55 2005
         (608 letters)



>mm_chr9_83028412_83029421
          Length = 1010

 Score = 1035 bits (535), Expect = 0.0
 Identities = 581/613 (94%), Gaps = 29/613 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcaaatcccactgtagttgctgccgaaggtatttacggactcctgtcttcttacatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 actcaaatcccactgtagttgctgccgaaggtatttacggactcctgtcttcttacatct 586

                                                                       
Query: 61  tatgagcgtgctcaggagcagccttgtaggtgtgcccaagagaaacgcatgcttggccac 120
           ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 585 tatgaacgtgcttaggagcagccttgtaggtgtgcccaagagaaatgcatgcttggccac 526

                                                                       
Query: 121 acatacagaaagtgacacttacatt----cggaagtagggaaatagagaaaatggcttcc 176
           |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 525 acatacagaaagtgacacttacattaaaa---aagtagggaaatagagaaaatggcttcc 469

                                                                       
Query: 177 atctttaaaatggaattgatatcagtaatgaacatgggcatctgtagtattgttcagatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atctttaaaatggaattgatatcagtaatgaacatgggcatctgtagtattgttcagatt 409

                                                                       
Query: 237 taaataactaacagtattgagtgcctggctgtgccaggtttgagctgtgggttttatgct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taaataactaacagtattgagtgcctggctgtgccaggtttgagctgtgggttttatgct 349

                                                                       
Query: 297 ctttgggctctatagttaagtgaagcagtgttatgagaaataagtgcatagaggacgtgt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctttgggctctatagttaagtgaagcagtgttatgagaaataagtgcatagaggacgtgt 289

                                                                       
Query: 357 tatactgcagtttcatgaaaaacacatgtttttctgtcaatgcgacattc-ggggacttc 415
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 288 tatactgcagtttcatgaaaaacacatgtttttctgtcaatgcgacattccggggacttc 229

                                                                       
Query: 416 acattgctttataaccttaatcccctcagcccccccccccccaatcaggtccactcatct 475
           ||||||||||||||||||||||||||||                     |||||||||||
Sbjct: 228 acattgctttataaccttaatcccctca---------------------tccactcatct 190

                                                                       
Query: 476 tcatcttatacactgaagcaccagcccctgacactttcccaaggcccttgtgagctgcgg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcatcttatacactgaagcaccagcccctgacactttcccaaggcccttgtgagctgcgg 130

                                                                       
Query: 536 ggaattcagttctagaggctccagagcctgtgatctcaaccatgggaagggaatattgga 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ggaattcagttctagaggctccagagcctgtgatctcaaccatgggaagggaatattgga 70

                        
Query: 596 attctctgagttg 608
           |||||||||||||
Sbjct: 69  attctctgagttg 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1010
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1000
Effective search space:   598000
Effective search space used:   598000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)