Query= MSMg01no507_l09.b1 MSMg01no507_l09.b1 CHROMAT_FILE:
MSMg01no507_l09.b1 PHD_FILE: MSMg01no507_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:21 2005
(577 letters)
>mm_chr9_14345772_14346741
Length = 970
Score = 967 bits (500), Expect = 0.0
Identities = 555/580 (95%), Gaps = 13/580 (2%)
Strand = Plus / Plus
Query: 1 tttctggtggcaaagcagctaccatcttcctgcccattctgcagcacaaagtatgtctac 60
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 201 tttctggtggcaaagcagctaccatcttcctgcccatcctgcagcacaaaatatgtctac 260
Query: 61 ttgtggtttgctccctggtatccaagctacttggatgaatccccaaggcagagctgtttc 120
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 261 ttgtggtttgctccctggtatccaagctgcttggatgaatctccaaggcagagctgtttc 320
Query: 121 ccatagtcacaggccaccatccatgagccctgcctcccaagacgcctgcatatgatcaga 180
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ccacagtcacaggccaccatccatgagccctgcctcccaagatgcctgcatatgatcaga 380
Query: 181 gagaacgtcccttctgcctccccccactctcccacccacccccaacccccaccccagcac 240
||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gagaatgtcccttctgcctccccccactctcccaccca--------ccccaccccagcac 432
Query: 241 agcctctca---tcntcttccctccatagccatcttctccaacagctatgactgtgtctg 297
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 433 agcctctcacact--tcttccctccacagccatcttctccaacagctatgactgtgtctg 490
Query: 298 tgtgggctgagggtcactgtgggcagccacaaggctctggggccaccaccacgaggtgtg 357
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 491 tgtgggctgagggtcactgtgggcagccacaaggctctggggctagcatcacgaggtgtg 550
Query: 358 ctccatgtgcaagatctcagtgtgacatctgagcttcatctatgtcctctggaggaatta 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctccatgtgcaagatctcagtgtgacatctgagcttcatctatgtcctctggaggaatta 610
Query: 418 ggaacaaagaaggtaaaagaggagccaacttgctgttttaaacatttattatttacaata 477
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 611 ggaacaaagaaggtaaaagaggagccaatttgctgttttaaacatttattatttacaata 670
Query: 478 ttaaggcacaaagtttaagcagcaaagaataggaaaatctttggctgaccaacagtatcc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttaaggcacaaagtttaagcagcaaagaataggaaaatctttggctgaccaacagtatcc 730
Query: 538 atattcactgtgggggggactccccaactcttcacacaga 577
||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atattcactgtgggggggactccccaactcttcacacaga 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 970
Length adjustment: 10
Effective length of query: 567
Effective length of database: 960
Effective search space: 544320
Effective search space used: 544320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_l09.g1 MSMg01no507_l09.g1 CHROMAT_FILE:
MSMg01no507_l09.g1 PHD_FILE: MSMg01no507_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:21 2005
(393 letters)
>mm_chr9_14533844_14534641
Length = 798
Score = 719 bits (372), Expect = 0.0
Identities = 390/398 (97%), Gaps = 5/398 (1%)
Strand = Plus / Minus
Query: 1 ggtcacagaactgacaagtgaaactcaaagaggtgagactataaagataacgctcaccct 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 598 ggtcacagaactgacaagtgaaacacaaagaggtgagactataaagataacgctcaccct 539
Query: 61 aacgagcaagctcttcccaaactcccctgtgtgcattcagttcttcaatgtcatcttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aacgagcaagctcttcccaaactcccctgtgtgcattcagttcttcaatgtcatcttcag 479
Query: 121 aaagtaagtggcttgaccttttagcatacagcccgggtattaactcgatcaaccgctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 478 aaagtaagtggcttgaccttttagcatacagcccgggtattaactcgatcaactgctgtg 419
Query: 181 ctggctgggcgagtggcgtgccagcagtgagacgggacaccatctatctcagtaactagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctggctgggcgagtggcgtgccagcagtgagacgggacaccatctatctcagtaactagc 359
Query: 241 cttaccccagagttggtcacaatacttttagtctttcattcctcatgccctgccccactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cttaccccagagttggtcacaatacttttagtctttcattcctcatgccctgccccactc 299
Query: 301 tgaccccagaccccccc--cccca---gcactgaatgtgtcaggatgctgcattcagaac 355
||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct: 298 tgaccccagacccccccgcccccaacagcactgtatgtgtcaggatgctgcattcagaac 239
Query: 356 ctttgttacagagatgccagtcacacttttgctccaca 393
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctttgttacagagatgccagtcacacttttgctccaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 798
Length adjustment: 9
Effective length of query: 384
Effective length of database: 789
Effective search space: 302976
Effective search space used: 302976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
