Query= MSMg01no507_m16.b1 MSMg01no507_m16.b1 CHROMAT_FILE:
MSMg01no507_m16.b1 PHD_FILE: MSMg01no507_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:27 2005
(689 letters)
>mm_chr9_52466810_52467901
Length = 1092
Score = 1168 bits (604), Expect = 0.0
Identities = 668/690 (96%), Gaps = 6/690 (0%)
Strand = Plus / Plus
Query: 5 gaattctccctaaagtcc-gttctgattctggacccatggaaggggcctaatatcctgta 63
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 gaattctccctaaaggacagttctgattctggacccatggaaggggcctaacatcctgta 263
Query: 64 gatctgacaagcacccaggtgatgtcaaagtggccagtctgtagtgtattttgagtgaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatctgacaagcacccaggtgatgtcaaagtggccagtctgtagtgtattttgagtgaca 323
Query: 124 aggttgtgtataacttcagtggtttgccttcaaacccacagtgtgttatacatgctacta 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggttgtgtgtaacttcagtggtttgccttcaaacccacagtgtgttatacatgctacta 383
Query: 184 aggcaccaacttaagacaaaaaaaaaa--tcctgtacgtagcagagctgccctgcagtag 241
||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct: 384 aggcaccaacttaagacaaaaaaaaaaaatcctgtacgtagcagagctgccccgtagtag 443
Query: 242 cccaggtggccatggatggctgaatggctgacacaccctcataccactggttcttccctg 301
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 444 cccaggtggccatggatggctgaatggctgacacacccttaaaacactggttcttccctg 503
Query: 302 ttgctccttggatccccctcccaaccttgcttcctccactgtctttcttccaacatgggt 361
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcgctccttggatccccctcccaaccttgcttcctccactgtctttcttccaacatgggt 563
Query: 362 gtgttagcacttgacctaatcaagatcttttcttcacagaataaagtcaatatgtttgag 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 gtgttagcacttgacctaatcaagatcttttcttcacagaataaattcaatatgtttgag 623
Query: 422 catacataaatgtaatacattttatatgcagtattaaaataaaaatatatggaagagcat 481
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 catacataaatgtaataaattttatatgcagtattaaaataaaaatatatcgaagagcat 683
Query: 482 cagctatttgtcaaatagcttcacacaccaggccctgagggaaaaactttacggccaggt 541
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 684 cagctatttgtcaaatagcttcacacaccaggccctgagggaaaaactttatggccaggt 743
Query: 542 ttgttctccccacattggctactgccaccata-tgttcatagctcctatttgtggatgca 600
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 744 ttgttctccccacattggctactgccacca-agtgttcatagctcctatttgtggatgca 802
Query: 601 aagtcc-ttcaacaaatgagacaggattctagaaaagtctctaagagaagttaattttga 659
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 803 aagtcccttcaacgaatgagacaggattctagaaaagtctctaagagaagttaactttga 862
Query: 660 cattaacatcaacagactaaagtggggccc 689
||||||||||||||||||||||||||||||
Sbjct: 863 cattaacatcaacagactaaagtggggccc 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1092
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1082
Effective search space: 734678
Effective search space used: 734678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_m16.g1 MSMg01no507_m16.g1 CHROMAT_FILE:
MSMg01no507_m16.g1 PHD_FILE: MSMg01no507_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:27 2005
(644 letters)
>mm_chr9_52615108_52616151
Length = 1044
Score = 580 bits (300), Expect = e-169
Identities = 317/324 (97%), Gaps = 3/324 (0%)
Strand = Plus / Minus
Query: 324 caatgctagtcctgggcaagtggccctgggctgtgtaaagagcaggctaagcaagttgtg 383
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1044 caatgctagtcctgggcaagtggttctgggctgtgtaaagagcaggctaagcacgttgtg 985
Query: 384 gggagctgactttcctaatggtcattcctccatggtcttggcttcagctcctgcctc--- 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gggagctgactttcctaatggtcattcctccatggtcttggcttcagctcctgcctcctt 925
Query: 441 cagattcttgccctgaggtcctgtccaggccttcctcactgatagctgtaatgtgtgtac 500
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 cagattcttgccctgagctcctgtccaggccttcctcactgatagctgtaatgtgtgtac 865
Query: 501 caaacaaaccctttcctcccatcctcttcaaacatgccaaaaaccgtagtttataaactg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 caaacaaaccctttcctcccatcctcttcaaacatgccaaaaaccgtagtttataaactg 805
Query: 561 aagatgtgtttaaaattttaaggccttgcactttttggaaatggacaaaactactaacca 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagatgtgtttaaaattttaaggccttgcactttttggaaatggacaaaactactaacca 745
Query: 621 ttaaatggaaaacctggataaaga 644
||||||||||||||||||||||||
Sbjct: 744 ttaaatggaaaacctggataaaga 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
