BAC Information

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BAC

Clone NameMSMg01-511E16
Chromosome9 (Build37)
Map Location 26,908,455 - 26,908,991
singlet/doubletsinglet
Overlap geneJam3
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511E16.T7 (MSMg01no511_e16.b1)MSMg01-511E16.TJ (MSMg01no511_e16.g1)
ACCAG584522AG584523
length715727
length of high quality
(start - end)
467 (45 - 511)537 (81 - 617)
definitionCHROMAT_FILE: MSMg01no511_e16.b1 PHD_FILE: MSMg01no511_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:07 2005CHROMAT_FILE: MSMg01no511_e16.g1 PHD_FILE: MSMg01no511_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCAGTCTGCCCAATAACAGCCAGCAGAAGCTCTATTCCCAGGAGC
TCTAACATGCCCAGGACCACAGGATCCCATGATCCCAGGAGCTTGGTCAC
TCTAGGACCTCAGGGTCCCAGAGGTAGGCTGACTCCCAGGAGCTCTGACA
CACCCGGAATCTCAAGATCACAGGATCAGAGAATCACAGAATCACAGAGA
CAGCTGAACTCTGAGGAGTTCTGAAACTACCAGGATCACAGGAAGGACAG
GTTCCAGTCAGATATTTCAAGGGCAGGTAGCACTACAGATAATTAGATGT
CAGGAGGCAAAAGTAAGAACTCAAGCAACAGAAACCAAGGTTACTTGGCA
TCATCAGAATCTAATTCTCCCCTCATAGCAAGTCCTGGACACACCATCAC
ACCAGAGAAGCAAGATTCAGATCTAAAATCACTTCTCGTGATGGTGACAG
AGGACTTTAAGAAGGACATATATAACTCCCTTAAAGAAAAAAAGGAGAAC
ACAGGTAAACATCTAGAAGCTCTTAAAGAAGAAACACAAAAAAAATCCCT
TTAAAAATTACAGGAAAACACAAACATGTGAAGGAATTGAACAAATCAAT
CCATATTCTAAACATGAATATAGAATCAATACAGAACTCCCAAAGGGAAA
CAACCCTCGAGTTAN
ACATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCTGTACCTGTAGGCAAGA
CGGCAACACTGCAGTGCCAAGAGAGCGAGGGCTATCCCCGGCCTCACTAC
AGCTGGTACCGCAATGATGTGCCACTGCCTACAGATTCCAGAGCCAATCC
CAGGTTCCAGAATTCCTCTTTCCATGTGAACTCGGAGACAGGCACTCTGG
TAAGAGCCCTTCCAAGGTTAGGAAGCAGATGCGTTTGTTGGAACCTAGGA
TGCCTGGAAGGAGAGCCAGGGAGGCTCCTTTTCAAGGCAGAGGCAAAACC
TAGAACATCAGAAACACTACAGGAAAGGTGGCTTCGGCTTTCATATAAAC
AAGTGTTAAGGGTAAAACAAAATGGAAACCTGTACATCTGGATGAGAACA
GGGGGCAGGTAAACAAGTGGGTTCATGTTATTAGAATCCTAGTTTGAATA
ATCAACGGAACATATGCACCACGTGAAGGAAATGTGCTTACTGGGCAGGT
GTTTGATATTAAGCCATTATCAACAGAATTGTGATTATAGTTCTTAAGTC
CTTATCATAAAGAGATACGGATTAAATATGTCTTGAATTTGCTTCCCAAT
AACTCCTGGTGCCTGCTGGGGGTTGGAATCACGTGCCTTTAGTCCCACAC
TCAAGAAGCAAGCGGATTTCTGTGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_e16.g1 MSMg01no511_e16.g1 CHROMAT_FILE:
MSMg01no511_e16.g1 PHD_FILE: MSMg01no511_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:07 2005
         (537 letters)



>mm_chr9_26908255_26909191
          Length = 937

 Score = 1015 bits (525), Expect = 0.0
 Identities = 534/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgctgtacctgtaggcaagacggcaacactgcagtgccaagagagcgagggctatccccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cgctgtacctgtaggcaagacggcaacactgcagtgccaagagagcgagggctatccccg 678

                                                                       
Query: 61  gcctcactacagctggtaccgcaatgatgtgccactgcctacagattccagagccaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcctcactacagctggtaccgcaatgatgtgccactgcctacagattccagagccaatcc 618

                                                                       
Query: 121 caggttccagaattcctctttccatgtgaactcggagacaggcactctggtaagagccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caggttccagaattcctctttccatgtgaactcggagacaggcactctggtaagagccct 558

                                                                       
Query: 181 tccaaggttaggaagcagatgcgtttgttggaacctaggatgcctggaaggagagccagg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tccaaggtgaggaagcagatgcgtttgttggaacctaggatgcctggaaggagagccagg 498

                                                                       
Query: 241 gaggctccttttcaaggcagaggcaaaacctagaacatcagaaacactacaggaaaggtg 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 gaggctccttttcaaggcagaggcaaaatctagaacatcagaaacactacaggaaaggtg 438

                                                                       
Query: 301 gcttcggctttcatataaacaagtgttaagggtaaaacaaaatggaaacctgtacatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcttcggctttcatataaacaagtgttaagggtaaaacaaaatggaaacctgtacatctg 378

                                                                       
Query: 361 gatgagaacagggggcaggtaaacaagtgggttcatgttattagaatcctagtttgaata 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catgagaacagggggcaggtaaacaagtgggttcatgttattagaatcctagtttgaata 318

                                                                       
Query: 421 atcaacggaacatatgcaccacgtgaaggaaatgtgcttactgggcaggtgtttgatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atcaacggaacatatgcaccacgtgaaggaaatgtgcttactgggcaggtgtttgatatt 258

                                                                    
Query: 481 aagccattatcaacagaattgtgattatagttcttaagtccttatcataaagagata 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagccattatcaacagaattgtgattatagttcttaagtccttatcataaagagata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)