BAC Information

Click to search

BAC

Clone NameMSMg01-511I23
Chromosome9 (Build37)
Map Location 121,255,464 - 121,255,787
singlet/doubletsinglet
Overlap genenone
Upstream geneMyrip, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
Downstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I23.T7 (MSMg01no511_i23.b1)MSMg01-511I23.TJ (MSMg01no511_i23.g1)
ACCAG584727AG584728
length621763
length of high quality
(start - end)
106 (60 - 165)506 (73 - 578)
definitionCHROMAT_FILE: MSMg01no511_i23.b1 PHD_FILE: MSMg01no511_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:28 2005CHROMAT_FILE: MSMg01no511_i23.g1 PHD_FILE: MSMg01no511_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXCTATTCGAGAGGACCGCGGATTCTC
TGTTGCACAATATCCATTAAAAAAACAAGACTATAACACTAGGCCCTCAA
AAAGTAGAGCCCTTCAGCATCCTCTACAGAATCCCGTAGCCAGCATGACT
TCAGCAAAGCATCTCAATTGGTAANCTTGGGGGGGGGGNNNNNNTNNNTT
TGCTTTCTGCTGTGGCTGGTAAAACCACTGGTGGATCCAAAAGCAACTTA
TAAGAGGGAAAGGGTTTTATTTGGGCTTACGGTCCCGTCCTTACGAGGGA
GCCGAACAAAACCCAGCCGGAACCGGGGGGCGGGACTGAACCAAAACCTG
GGAAAAACGGGTTTCCCCGGGGGGCTCTTCCCCCAAAAAAAGTTTTTTTT
CCTTTAAGGCCCGGGCCCCCCTGGAAAAGGGAAAGGGGTCCCCCCCAAAG
GGGGGGAGGAGGCCCCCCCCCCTTTTTTTTTTTTTAAAAAAACCCCCCCC
AAAAAATTTTTTTTGGCCCCCTTTGGGGGGGGAGAAACCCCCCGGGGGGG
GGCCCTCTCCCCAAAAATTCTGGGGGGGGGCCCCCCCCCGGCGGAGAGAA
AAAAGCACCCTAGGTGGTGTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAACCCCTTTCCAGAGTAACTGAGCA
ATTTCTAAAAGAAAGCATTACTGAGCAAAACAACAAGAAGATTGGCAGAG
GGATAGAGGGTGTGAGCTGAGGATAGCAGGATGAATGGGGAAGGTGAAAG
GATGGACTGATGGACAGACGGATGGATGGATGGACACACAGACCCAGAAG
GTGGTAGGTGGGTAGGCGTCTTAGTGTTAATTGTTGTGATGAAACATCAT
GACCAAAGCAACTTGGGGAGGAAAGGGTTTATTTGGCTTACACTTCCACA
TCCCTGTTCATCACTGAAGGAAGCCAGGACAGGAACTCAAACCAGGTAGG
TACCTGGAGGCAGGAGCTGATGCAGGAGCCACGGACACTACAGCACAGAG
CAGTGGTCCTCAACGTTCCTAACACTGTGACCCTTTAATATAGTCTCTCA
TATTGTGGTGACCCCCGAACATAAATAACAGTTTTGTTGTTATTTTGTAA
TTGTAATTTTGCTACTGTCATGAGTCATTAATGTAAATATTTTTGGAGAA
AGAAGTTTGCCAAACGGGTCTTGACCCATAAGTTGAGAACCGCTGCCCTA
TANGCTTGCCTGAAGCCCAATCTTACAGAGGCATTTCCTCAGTTGAAGTT
CCTTCCTCACATGGCTCCTAACTTGTTCAAGTTGACATCAAACTATCCCG
CCCAGCGGGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i23.g1 MSMg01no511_i23.g1 CHROMAT_FILE:
MSMg01no511_i23.g1 PHD_FILE: MSMg01no511_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:28 2005
         (506 letters)



>mm_chr9_121255461_121256366
          Length = 906

 Score =  603 bits (312), Expect = e-177
 Identities = 321/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataacccctttccagagtaactgagcaatttctaaaagaaagcattactgagcaaaaca 60
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aataacccctttccagggaaactgagcaatttctaaaagaaagcattactgagcaaaaca 268

                                                                       
Query: 61  acaagaagattggcagagggatagagggtgtgagctgaggatagcaggatgaatggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acaagaagattggcagagggatagagggtgtgagctgaggatagcaggatgaatggggaa 208

                                                                       
Query: 121 ggtgaaaggatggactgatggacagacggatggatggatggacacacagacccagaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggtgaaaggatggactgatggacagacggatggatggatggacacacagacccagaaggt 148

                                                                       
Query: 181 ggtaggtgggtaggcgtcttagtgttaattgttgtgatgaaacatcatgaccaaagcaac 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ggtaggtgggtgggcgtcttagtgttaattgttgtgatgaaacatcatgaccaaagcaac 88

                                                                       
Query: 241 ttggggaggaaagggtttatttggcttacacttccacatccctgttcatcactgaaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ttggggaggaaagggtttatttggcttacacttccacatccctgttcatcactgaaggaa 28

                                   
Query: 301 gccaggacaggaactcaaaccagg 324
           ||||||||||||||||||||||||
Sbjct: 27  gccaggacaggaactcaaaccagg 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)