BAC Information

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BAC

Clone NameMSMg01-512H23
Chromosome9 (Build37)
Map Location 13,335,449 - 13,335,919
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039680, LOC665285, LOC100039729
Downstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512H23.T7 (MSMg01no512_h23.b1)MSMg01-512H23.TJ (MSMg01no512_h23.g1)
ACCAG585443AG585444
length787779
length of high quality
(start - end)
543 (39 - 581)471 (65 - 535)
definitionCHROMAT_FILE: MSMg01no512_h23.b1 PHD_FILE: MSMg01no512_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:40 2005CHROMAT_FILE: MSMg01no512_h23.g1 PHD_FILE: MSMg01no512_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
TCTGTTCTTTAGCTTCTACGTGTGGTACTTTGTTTCTTCTCATGTTACTC
TGCTCTTTGAGGCAAGTTCTATATGAAGCTCCTGCTGCCCCTGTCTGAAG
AGGCCAGGCATTCAAGAGTCGCACTCAGAGGCTCTCACTTTGCTTGGGCA
TCTTTTGTGTTGAAAGCAATGTTAATCATCTCAAAGGACCTCTGCTGAGA
TTGCGTGTCAGAACCCTTAATTTTATTGCAGCTCTGTGCGTAGGCAGGTT
TATGTGGTCTGGATGTGTTACTTGCTAATGTGTATGCTATAAGTGCCCAG
GAATGCCCTTTGGAGAAGAGGAAAGTATTGATCACCTAAATTAAAATATG
CATGGTGTACGCTGGTGAAGTTCTCTAACCAGCATGCGCTGTGTGGCAGC
GCCTTGGGCATCATCAGTACTACCTGCCAAAGAAAGGAGGGAGGACAGCT
TCTGTTCGGCAGGGTAAGGTTGTTTCTAAGGGTGTTCTATGCAGAGAATA
TATACTGTCTGGGCTCTTTAATAGCTAGAGTGTNAAGAACAACGCAAGAA
TAACCTCTAAGTCAGTTCTAATTCTGTCCACTTGAGAGCCTAATTCTGCT
GCCCTTACTCAGCCAGTTTCTTCATTTACCTCCAGCTGAGGGGAAGCCCC
ACTTCTGTGGAGGCTGCAAAAACAGGCCCTCACAAAAGGCTAAAAATGGT
AGGCCCTGATGCTTTTCTTCCACTCAGAAGAGAATTN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTAGCCCAGCTGGGGAGGGCAGTGGTAGGGGCTCA
GTCTGTAATCTGCTGCTTTGACCCCAACAGCTGCATTTCTGCTTCATTCT
GTGAGAGCATGCAACAAGCCATCTTAAATGCAAGGTGGCACACAGCAAGC
AGGTAATAGTTTTCCTGATTGAAGTCACCTGTTTTCCCTGACAGCCAGAG
TTAGGTGAGATAAAAATCTGGAAAATGCATACGTTCCCCCAGTCCCTTTC
TGAAATGTTGCTTTTCGTTGTTGTTCACAGAAGCTAAATGTACCTCTTCT
GTGTTAGCTAAAGTCCCAGGAAGCGAACGTGAGATTCCCCAGGGAGAGGC
TTGCTCAGGGGCTGTGCTGCTTGCTTCCTTTCCGCCCTTGGTCCTTAGAA
AGGAAGCACTGACCGTCTCCCAGGGTTCAGCCCATCCCTCTGCCTCCATC
TCTCCTTTCCTCTGACAACAGGTCGGGGGAATTCAGACTCACCCACAAAA
GATTAAAAGTTCCAAATCACTACAACTTTGTGCATGTAGACTTGGAAAAC
ATTCAAATACTCAGACCTGGAGTTGTTTCTTCTGGATTACTGTTGTGCAG
ACAGATGAAACTAGAATAGCTACAGGTTTGTAGTGCAGATGCACAAACTA
TAAAACCTCACTTCCACCTTCTGTCAGCGTTGTAGAGGGATCTTCCTGCT
CCTGACTTCTAGTAGACAAAGCCAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_h23.g1 MSMg01no512_h23.g1 CHROMAT_FILE:
MSMg01no512_h23.g1 PHD_FILE: MSMg01no512_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:40 2005
         (471 letters)



>mm_chr9_13335249_13336119
          Length = 871

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagcccagctggggagggcagtggtaggggctcagtctgtaatctgctgctttgaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctagcccagctggggagggcagtggtaggggctcagtctgtaatctgctgctttgaccc 612

                                                                       
Query: 61  caacagctgcatttctgcttcattctgtgagagcatgcaacaagccatcttaaatgcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caacagctgcatttctgcttcattctgtgagagcatgcaacaagccatcttaaatgcaag 552

                                                                       
Query: 121 gtggcacacagcaagcaggtaatagttttcctgattgaagtcacctgttttccctgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtggcacacagcaagcaggtaatagttttcctgattgaagtcacctgttttccctgacag 492

                                                                       
Query: 181 ccagagttaggtgagataaaaatctggaaaatgcatacgttcccccagtccctttctgaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 ccagagttaggtgagataaaaatctggaaaatgcatacgttcccccagtcgctttctgaa 432

                                                                       
Query: 241 atgttgcttttcgttgttgttcacagaagctaaatgtacctcttctgtgttagctaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgttgcttttcgttgttgttcacagaagctaaatgtacctcttctgtgttagctaaagt 372

                                                                       
Query: 301 cccaggaagcgaacgtgagattccccagggagaggcttgctcaggggctgtgctgcttgc 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cctaggaagcgaacgtgagattccccagggagaggcttgctcaggggctgtgctgcttgc 312

                                                                       
Query: 361 ttcctttccgcccttggtccttagaaaggaagcactgaccgtctcccagggttcagccca 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 ttcctttccgcccttggtccttagaaaggaagcactgaccgtttcccagggttcagccca 252

                                                              
Query: 421 tccctctgcctccatctctcctttcctctgacaacaggtcgggggaattca 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tccctctgcctccatctctcctttcctctgacaacaggtcgggggaattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)