BAC Information

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BAC

Clone NameMSMg01-512P04
Chromosome9 (Build37)
Map Location 24,698,473 - 24,698,796
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512P04.T7 (MSMg01no512_p04.b1)MSMg01-512P04.TJ (MSMg01no512_p04.g1)
ACCAG585789AG585790
length734752
length of high quality
(start - end)
498 (64 - 561)334 (73 - 406)
definitionCHROMAT_FILE: MSMg01no512_p04.b1 PHD_FILE: MSMg01no512_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:17 2005CHROMAT_FILE: MSMg01no512_p04.g1 PHD_FILE: MSMg01no512_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCGGAA
TTCGAATTTCTCCATTTCTATCTCCTTGTACTAAGGTTAAATCTAAGTGG
ATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAA
AAGTAGGGAAAAGCCTCGAAGACATTGGTACAGGGGAAAAATTCCTGAAT
AGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAATAGAACCT
CATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACATCGTCAATAAGACAA
AAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCGGAT
AGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAG
AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAAT
TCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCATATCATAACAACCCTGAGATTCCA
CTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAT
GCTGGCGAGGACGTGGATAAAGGGGAACACTCCTCCCTTGTTGGTGGGAA
TGCAAGCTTGTACAAAAATTCCATTTTGCATTAGCCAATTATTCCTGTAC
ATGGGGCCTGCCCTGTTATGCAGTGTTCTTAACN
ATTACAGTGAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTTATTGTAATTCTCTAATTATTTT
TAATGGGGCAATTACTCTGCTATAGCCTTGACCAAATTCCAAAAATCTTG
AATGATATATTCAAAGCAAATGGCTAAGTAGTATTTGCAAGAATAGCCTT
TCTTTTTTTTAGTATTCATAGACAGAGTGGGTTTAAAAAGCTAGGCAAGT
TACCATTTATAGTTAGTTTTTTTTTAACTCTGTGTTGATCCAGTTTGGTT
GAGAACATGACCTGTAGGACTGACTGGCTTACTTTTACATTGGAGAAATT
TTACATTTAAGAAGTTTTGTCCCTAATTTGTAGTTTACTTGAAAGAAAGG
GTGTGAATGTGAGCGTGCACACACGTGTGTGCGTGCATGTGAGTGAGCGT
GCATGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGCGTGCGTGTGT
ATTAATTAATATCTTTATTTTTTACTCCTATCTTTTTTCTTTTCTTATAT
TTCACACCAAAACCTATCTTATTCTTTCCTTTTTTTATCCCTTCTCCGTT
TTTACTAGTCTTAATTCTCTTTCACTCTTATATTTCCAACCTGAAGCAAA
CCTCAATTACCTTTTCCACCCCTATTTTTTCAGCCCCTACCCTCTCATCT
TTTTTGTTACTCCAGTAGTCCGCCCCCTTTTTTTATTACATTATTATCTA
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_p04.g1 MSMg01no512_p04.g1 CHROMAT_FILE:
MSMg01no512_p04.g1 PHD_FILE: MSMg01no512_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:17 2005
         (334 letters)



>mm_chr9_24698219_24698952
          Length = 734

 Score =  553 bits (286), Expect = e-162
 Identities = 318/338 (94%), Gaps = 18/338 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgttattgtaattctctaattatttttaatggggcaattactctgctatagccttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||          ||||||
Sbjct: 578 actgttattgtaattctctaattatttttaatggggcaattact----------cttgac 529

                                                                       
Query: 61  caaattccaaaaatcttgaatgatatattcaaagcaaatggctaagtagtatttgcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 528 caaattccaaaaatcttgaatgatatattcaaagcaaatggctaagtagtatttgtaaga 469

                                                                       
Query: 121 ata--gcctttctttttttt--agtattcatagacagagtgggtttaaaaagctaggcaa 176
           |||  ||    |||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atatggc----cttttttttaaagtattcatagacagagtgggtttaaaaagctaggcaa 413

                                                                       
Query: 177 gttaccatttatagttagtttttttttaactctgtgttgatccagtttggttgagaacat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gttaccatttatagttagtttttttttaactctgtgttgatccagtttggttgagaacat 353

                                                                       
Query: 237 gacctgtaggactgactggcttacttttacattggagaaattttacatttaagaagtttt 296
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 352 gacctgtaggactgactggcttacttttacattggagaaattttacatttaacaagtttt 293

                                                 
Query: 297 gtccctaatttgtagtttacttgaaagaaagggtgtga 334
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtccctaatttgtagtttacttgaaagaaagggtgtga 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)