Query= MSMg01no513_h13.b1 MSMg01no513_h13.b1 CHROMAT_FILE:
MSMg01no513_h13.b1 PHD_FILE: MSMg01no513_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:59 2005
(611 letters)
>mm_chr9_32331680_32332689
Length = 1010
Score = 1114 bits (576), Expect = 0.0
Identities = 602/616 (97%), Gaps = 11/616 (1%)
Strand = Plus / Plus
Query: 1 agtctgttctctcaagaactgggccactaccacacagaactaacaaacatacgctcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctgttctctcaagaactgggccactaccacacagaactaacaaacatacgctcttta 260
Query: 61 cctaaataaaacccaggaatatagggttatctgaaaacaccagaaagcattatgtattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaataaaacccaggaatatagggttatctgaaaacaccagaaagcattatgtattag 320
Query: 121 ttatttgaatatttctaattgtctgtacacaacgtgggctacggtaaagatctagggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttgaatatttctaattgtctgtacacaacgtgggctacggtaaagatctagggtgt 380
Query: 181 tgtgattgtccggaaactgtccacaagcaagccttaaaaaaaa-----cctgttgatagc 235
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 381 tgtgattgtccggaaactgtccacaagcaagacttaaaaaaaaaaaaacctgttgatagc 440
Query: 236 aacaaataggtgaactctgaaaggctgcctttgcttccattttgtgatgtggtttttaca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaaataggtgaactctgaaaggctgcctttgcttccattttgtgatgtggtttttaca 500
Query: 296 agttgtgaggggggacagtgttggggggggtattcactaatgtttttacctttgctctca 355
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 501 agttgtgaggggggacagtgttggggggg-tattcactaatgtctttacctttgctctca 559
Query: 356 ggcttcgggagaaaatgcagaatgctcgttcagtgaagcatatagatttggagaatagct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggcttcgggagaaaatgcagaatgctcgttcagtgaagcatatagatttggagaatagct 619
Query: 416 tcgttttgttttcttagagaaagatacagcagacctatatcattctatagttgtagtctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcgttttgttttcttagagaaagatacagcagacctatatcattctatagttgtagtctc 679
Query: 476 taacaattacagggcatgttgtctgaacaactcaatctccagctccaggaattttttttt 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taacaattacagggcatgttgtctgaacaactcaatctccagctccaggaatttttttt- 738
Query: 536 ttttgaagtctcatttcaggtggttaggaataaaaccaaagtatgtagtccaacctacct 595
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 739 ----gaagtctcatttcaggtggttaggaataaaaccaaagtatgtagttcaacctacct 794
Query: 596 agaaaaagaactgaag 611
||||||||||||||||
Sbjct: 795 agaaaaagaactgaag 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_h13.g1 MSMg01no513_h13.g1 CHROMAT_FILE:
MSMg01no513_h13.g1 PHD_FILE: MSMg01no513_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:59 2005
(530 letters)
>mm_chr9_32472259_32473188
Length = 930
Score = 986 bits (510), Expect = 0.0
Identities = 525/530 (99%)
Strand = Plus / Minus
Query: 1 aaggaaacaaaagcgagtcctgaaaacagaacaacagaattcaggcaactaggggctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aaggaaacaaaagcgagtcctgaaaacagaacaacagaattcaggcaactaggggctctg 671
Query: 61 gttggatctggggcaagcagtcagacttactacagacagggcctctggggagtctcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gttggatctggggcaagcagtcagacttactacagacagggcctctggggagtctcaccc 611
Query: 121 tagctcaggagagggtggccttattgccaatgagtcaggaaagaggaggagtggggaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tagctcaggagagggtggccttattgccaatgagtcaggaaagaggaggagtggggaaga 551
Query: 181 agcagttggtacaggtggttggagatgggaaaggggtgtagaaaagagagtgaagatgcc 240
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 550 agcagttggtacaggtggttggagatgggaaaggggtgtaggaaagagagcgaagatgcc 491
Query: 241 tgtggagaataaaaggagataaaggaaagaagttccatactgtaagagggccaatccaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 490 tgtggagaataaaaggagataaaggaaagaagttccatactgtaagagggctaatccaca 431
Query: 301 cgcctctgttttcccagctcatcctctatgatgctaaaccgtggttctcaacaaccatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cgcctctgttttcccagctcatcctctatgatgctaaaccgtggttctcaacaaccatcc 371
Query: 361 taaagggtgaaaactgcacagaaggcacaaactgtttacaaaatgaagaccgaaagcaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taaagggtgaaaactgcacagaaggcacaaactgtttacaaaatgaagaccgaaagcaac 311
Query: 421 ccttcttgggcccattggtagagtaccaccttcctgttggacagtaaagtagcacaaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccttcttgggcccattggtagagtaccaccttcctgttggacagtaaagtagcacaaagt 251
Query: 481 tactgagccacagacgcggtgctttccgcagggaacaatagcgtatggag 530
||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 250 tactgagccacagacgcggggctttcctcagggaacaatagcgtatggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
