XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATATATGTTTTTGCCTTGCTGTATATAGAATATAATTTCTATCACCTCTG
GTTCTTACAGTCTTTCTCCTCTCTTTTCCACATATATCCCTGAGCCTTCA
GAGGAGAGGTATGGTGTAGTTATCTCATTTAGTCCTTAGCATTTGAAGTC
TCTTTTTCTTTACATATTAAAAAGTTGTGTGCTTCACTGTTAATTGCCAT
CTACTGCAAGAAAAACTCCTCTGATGAGGCTTAAGTGAGAGGTCCTGATC
TATGGGTTATATAATGACATATAACTATGCCATTAGAAGCTATTTTATTG
CTTTGCTCATTTAAGTGAATAAGTAGTAGTTTTTTACCCCAAGTCCATGG
CATGTCCAGTCTGAATTCTTAGCCTCATTGACAGTGTCAGGTATGGGTTA
CATATTGTGAGCCTTAAATCCAATTAAAAGGTGGTTTGCTACTCCAACAG
CACTGGTAACTTTATTGTTTCAATGGCCATATCTTGCTGGCAGGTTATTT
ATTGTAGTTCACAGGGTTTGCAGCTGGGTGAGGTTGACAATTACTTTTCT
CCTCCAGTAGTGTGTATAACATATTACAACATCATGAACACTAGCCAGTA
GGAATAAAACTTCATGTGAGTACCAGATAGGTTTCCCCATGTTCTATGCC
GTAAGTATGAGTAGTCTTCAGAAATGGGTTCTTATTTT

ATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGCAATCATTGATTACTTCTTATATGTG
ACAAGATAATTACAAACAGCAAAAAAAAAAAAAATAGACACACTGGATTT
CTAACTGAAGAAGGCTTCAAAATGGCCAGCATGTATATCAAAATATGCCT
AGCAGTGTTTCTCACCAGGAAAATGTAAGTCAAAATCCAAAGCAGGTACA
CACCAGGATAATTATAATAAAAGGCAGACAACATAAGCTTTGGCAATGAC
ATAGAAAATATTGGTGGTGTGACTTTGAAGTTGGACCAGTAGCTTCTCAC
AAACTTAGTTTTCATATGACCCAACTGTCACAGCTCAGATGAATAAACCC
AAGGGAAACATGAACTTCAACAAAATATATTCTGATTTCTACAATAATAT
TTCCAACAATCAGAATGATACAATAAACCAATTGTCTATTAAGAGATAGC
CATGCGGTAATAAACCAGTAAAACAAAATATTATATAGCTATGAAAAAGA
AGGCTGGTCTGTGTTGCAACATGAGCCTGGAAGACAGTTTAGTGGCTGTG
ATTGCTGTCTGAAAGCTGTCAGGAGGTAGGGAAAGAGGCAATTTACAAGT
GACTGTTAGTGGGGTGGTTTCTTTTAGTGTGATAAAAATGTTCTTCAATT
AACGATTAGTTATTGTTGAACAACTTTGTGAATATACTAAACACTA

Query= MSMg01no513_k06.g1 MSMg01no513_k06.g1 CHROMAT_FILE:
MSMg01no513_k06.g1 PHD_FILE: MSMg01no513_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:12 2005
         (641 letters)



>mm_chr9_28609379_28610419
          Length = 1041

 Score = 1143 bits (591), Expect = 0.0
 Identities = 627/641 (97%), Gaps = 4/641 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcaatcattgattacttcttatatgtgacaagataattacaaacagcaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |
Sbjct: 984 tttgcaatcattgattacttcttatatgtgacaagataattacaaacagc----aaaaca 929

                                                                       
Query: 61  aaaatagacacactggatttctaactgaagaaggcttcaaaatggccagcatgtatatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aaaatagacacactggatttctaactgaagaaggcttcaaaatggccagcatgtatatca 869

                                                                       
Query: 121 aaatatgcctagcagtgtttctcaccaggaaaatgtaagtcaaaatccaaagcaggtaca 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 868 aaatatgcctagcagtgtttctcaccaggaaaatataagtcaaaatccaaagcaggtaca 809

                                                                       
Query: 181 caccaggataattataataaaaggcagacaacataagctttggcaatgacatagaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 caccaggataattataataaaaggcagacaacataagctttggcaatgacatagaaaata 749

                                                                       
Query: 241 ttggtggtgtgactttgaagttggaccagtagcttctcacaaacttagttttcatatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttggtggtgtgactttgaagttggaccagtagcttctcacaaacttagttttcatatgac 689

                                                                       
Query: 301 ccaactgtcacagctcagatgaataaacccaagggaaacatgaacttcaacaaaatatat 360
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 688 ccaactgtcacagctcagatgtataaacccaagggaaacatggacttcaacaaaatatat 629

                                                                       
Query: 361 tctgatttctacaataatatttccaacaatcagaatgatacaataaaccaattgtctatt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 628 tctgatttctacaataatatttccaacaatcagaatgatacaataaaccatttgtctatt 569

                                                                       
Query: 421 aagagatagccatgcggtaataaaccagtaaaacaaaatattatatagctatgaaaaaga 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 568 aagagatagccatgcggtaataaaccagtaaaacaaaatattatatagctataaaaaaga 509

                                                                       
Query: 481 aggctggtctgtgttgcaacatgagcctggaagacagtttagtggctgtgattgctgtct 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 508 aggctggtctgtgttgcaacatgagcctggaagacagtttagtggctgggattgctgtct 449

                                                                       
Query: 541 gaaagctgtcaggaggtagggaaagaggcaatttacaagtgactgttagtggggtggttt 600
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 448 gaaagctgtcaggaggtagggaaagaggcaacttacaagtgactgttagtggggtggttt 389

                                                    
Query: 601 cttttagtgtgataaaaatgttcttcaattaacgattagtt 641
           ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 388 cttttggtgtaataaaaatgttcttcaattaacgattagtt 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)