XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCTGCTGTTCATAAGGCGGTGAGAGAATTTACAGCTGTGTTTTCCTCCTT
GCCTTTGTTTTCATGCATTCACCTTTGTGCAAGACATTCTGAGATATATT
TTTTAGGTACACACAATCTAAAAGTGTCAAAGTTTATATAGGATGGATGT
TTATTTTTACAACGCATATCTATACTTAAAATGTTGTAGGTGTAATTTTA
TATTACATTCACTTTTTAAATATTGTTTACATGAAACATTTTTCCAACAT
TTTACTTATGAACTTCTTGTGTACTTTTCTTTAAATTGTGTCACTGTGAA
GTGAACCTAGTGGAATTTAGTTATATTATTCAGAATGACAATCCTTGTAG
AACCATTTACTAGTTACTCAGCTACAACAATTCCATTACTGCAGTATCTG
TTGTATATATTTGGCTTTTCCTGCTCTTTCCTGTTATTGCCTTCTTTTGG
AAATATCAACTATTTTTCATTTGTCATATTCAGTTTCCTTTAACTTTTCA
CACATAACACAAAGATGTTAAGGCCTATCCACTCTATGCCATAGTTTATC
TAATGTTAGTTTTTTCTTATTCATGGCACATATACTCTTTCCTGATCAAC
TTTGATGCTATATAAATGTATGCATGTATGTGTGTGTGTATATATATATA
TAAATGATACAAACTTTTTAAGAAATTTTGGTGTGAAAGTTAATG

AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATAAATTGACATGTCCAAATGCTACTCA
TAAAAATATAAAAAAGGCAGCCATTTTATGAAAGAATTGAGGGAGTCTTT
CAGAATATAAGACACTATCAACATAATGCTTAATCATTGTATTTTTTTGT
TATATGTCCAAGCATATACCTTGAACATATCTACACAAACATTCTATACA
AATTGTCATAGCAGCATCAATCATAATAGAATAAAAAGAGAATGGGTATA
TAGGTAAAACTTTAGTCTGCACAAAGGAAAGTTATATGGCTATGAAAAAT
GGAATTGCGTACCAGTACATACAACAGGGACAGATTTTAAAAACATAACG
TTCTTGTTTGCTATTTTGTTGATATGATAAAACATTGACCAAAACTAACT
TGGAGAGGAAGAGGTTCATTTCAAATTGCAAGTTATACTTAATCACTGAG
GGAAATCAGGGTAGGAGGTGAAGAAAGGAAACTGGAGGTAGGATTCGAAG
TTAAAACTGTAGACTAATGCTGTTTCCTGAATTGCTTATCATGGCTACTT
TTCTTTTAAAAGCTATAACCATCTTCTCAGGATGGCACTTTCAACAATTG
GATAGATCCTCTTCCATCAATCAGTGATCAAGAGAATACTCCTCAGATAT
GGCCACGGGCCAATATGATGAAAGCCAATTTGATAATTCCTCAACTGAGA
N

Query= MSMg01no514_g14.b1 MSMg01no514_g14.b1 CHROMAT_FILE:
MSMg01no514_g14.b1 PHD_FILE: MSMg01no514_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:18 2005
         (672 letters)



>mm_chr9_33396998_33398073
          Length = 1076

 Score = 1006 bits (520), Expect = 0.0
 Identities = 545/556 (98%), Gaps = 6/556 (1%)
 Strand = Plus / Minus

                                                                        
Query: 114  ttaggtacacacaatctaaaagtgtcaaagtttatataggatggatgtttatttttacaa 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ttaggtacacacaatctaaaagtgtcaaagtttatataggatggatgtttatttttacaa 1017

                                                                        
Query: 174  cgcatatctatacttaaaatgttgtaggtgtaattttatattacattcactttttaaata 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 cgcatatctatacttaaaatgttgtaggtgtaattttatattacattcactttttaaata 957

                                                                        
Query: 234  ttgtttacatgaaacatttttccaacattttacttatgaacttcttgtgtacttttcttt 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  ttgtttacatgaaacatttttccaacattttacttatgaacttcttgtgtacttttcttt 897

                                                                        
Query: 294  aaattgtgtcactgtgaagtgaacctagtggaatttagttatattattcagaatgacaat 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  aaattgtgtcactgtgaagtgaacctagtggaatttagttatattattcagaatgacaat 837

                                                                        
Query: 354  ccttgtagaaccatttactagttactcagctacaacaattccattactgcagtatctgtt 413
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 836  ccttgtagaaccatttactagttactcagctacaacaattctattactgcagtatctgtt 777

                                                                        
Query: 414  gtatatatttggcttttcctgctct----ttcctgttattgccttcttttggaaatatca 469
            |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 776  gtatatatttggcttttcctgctcttttattcctgttattgccttcttttggaaatatca 717

                                                                        
Query: 470  actatttttcatttgtcatattcagtttcctttaacttttcacacataacacaaagatgt 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  actatttttcatttgtcatattcagtttcctttaacttttcacacataacacaaagatgt 657

                                                                        
Query: 530  taaggcctatccactctatgccatagtttatctaatgttagttttttcttattcatggca 589
            ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 656  taaggcctatccactctatgccatattttatctaatgttaattttttcttattcatggca 597

                                                                        
Query: 590  catatactctttcctgatcaactttgatgctatataaatgtatgcatgtatgtgtgtg-- 647
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 596  catacactctttcctgatcaactttgatgctatataaatgtatgcatgtatgtgtgtgta 537

                            
Query: 648  tgtatatatatatata 663
            ||||| ||||||||||
Sbjct: 536  tgtatgtatatatata 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1076
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1066
Effective search space:   705692
Effective search space used:   705692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)