Query= MSMg01no514_p14.b1 MSMg01no514_p14.b1 CHROMAT_FILE:
MSMg01no514_p14.b1 PHD_FILE: MSMg01no514_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:04 2005
(697 letters)
>mm_chr9_21056424_21057520
Length = 1097
Score = 1324 bits (685), Expect = 0.0
Identities = 691/693 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtctggtctggtgtgagtttggcttagggcaagaatggagcagggagaggagt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtctgggctggtgtgagtttggcttagggcaagaatggagcagggagaggagt 264
Query: 65 tgaggcggaggtgatagaagaaccaggtccggcaaggccctgatcaacaggcctgaggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaggcggaggtgatagaagaaccaggtccggcaaggccctgatcaacaggcctgaggag 324
Query: 125 tgtgactacctgctcgctgtgtgactaggcactgctagatcaacctctccgatctcagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgactacctgctcgctgtgtgactaggcactgctagatcaacctctccgatctcagtt 384
Query: 185 tgctacctgtgaattggagacatatgacagtggtgtggtacctgatccctatcatgtcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctacctgtgaattggagacatatgacagtggtgtggtacctgatccctatcatgtcag 444
Query: 245 tgagagggagatagacatcagaagagggtgagttcaaggccagcttgggctgtgtccctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagagggagatagacatcagaagagggtgagttcaaggccagcttgggctgtgtccctt 504
Query: 305 gttagaggaatagaatgtccatgtctcctcgggcttttggcagagatcaggggttaaaaa 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 gttagaggaatagaatgtccatgtctcctcggacttttggcagagatcaggggttaaaaa 564
Query: 365 tagaaatttcagggctgtggctgtaatatactttctctgacatgcaggaactctgggttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagaaatttcagggctgtggctgtaatatactttctctgacatgcaggaactctgggttc 624
Query: 425 catgcccagcaccagataaacctggcatggtggagctcacctgctatcccagcacttctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catgcccagcaccagataaacctggcatggtggagctcacctgctatcccagcacttctg 684
Query: 485 aggcggaggcaaaagaatcaggagttcaaggccatcctcaaccacaaaggatagttggtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggcggaggcaaaagaatcaggagttcaaggccatcctcaaccacaaaggatagttggtt 744
Query: 545 tgtggcaaacttggaggtggcaaacgcctttaatcccaacacccaggagaccaaggcagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtggcaaacttggaggtggcaaacgcctttaatcccaacacccaggagaccaaggcagg 804
Query: 605 caaatccttgggagttcaagtccagtctggtttacaaagcaagtttgacacagtgagttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaatccttgggagttcaagtccagtctggtttacaaagcaagtttgacacagtgagttt 864
Query: 665 tgtctaaaataaataagaataaagctggctggg 697
|||||||||||||||||||||||||||||||||
Sbjct: 865 tgtctaaaataaataagaataaagctggctggg 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_p14.g1 MSMg01no514_p14.g1 CHROMAT_FILE:
MSMg01no514_p14.g1 PHD_FILE: MSMg01no514_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:04 2005
(613 letters)
>mm_chr9_21224461_21225470
Length = 1010
Score = 1112 bits (575), Expect = 0.0
Identities = 603/613 (98%), Gaps = 3/613 (0%)
Strand = Plus / Minus
Query: 1 aattcacagcaaccaaaggtggctcacaaccatctgtagtgggatccgatgccctcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 aattcacagcaaccaaaggtggctcacaaccatctgtagtgggatccgatgccctcttct 860
Query: 61 ggtgtgtctgaggacagcgacagcgtactcacatacataaagaaatagacgagagcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ggtgtgtctgaggacagcgacagcgtactcacatacataaagaaatagacgagagcagaa 800
Query: 121 agccagctgccactctccattggtgaccctgggcagaggtgtttcttccctgggccagca 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 799 agccagctgccactctccattggtgaccctgggcagaggtgtttcttccccaggccagca 740
Query: 181 aggcacccgacaaccaggggagaataagagcgatagcttttagggtggctgggagatcct 240
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 739 aggcacccgacaaccaggggagaatgagagcgatagcttctagggtggctgggagatcct 680
Query: 241 gacctcaagagagagcccaaagtctgacactacattccaaagcagggctgtgcccagtgg 300
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 679 gacctcaagagagagccc--agtctgacactacattccaaagcagggctatgcccagtgg 622
Query: 301 ttcccagttaccccacagttactatgccaattttttgttttgttttgttttcattgagaa 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 ttcccagttaccccacagttactatgccaa-tttttgttttgttttgttttcattgagaa 563
Query: 361 aggatcttactctactctaggctggctgtgaaaaccaagctggccttaaacttgcagcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggatcttactctactctaggctggctgtgaaaaccaagctggccttaaacttgcagcta 503
Query: 421 acctccaactcctgcctttccagccaagctctggagccaccagactcaaactcaagtcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acctccaactcctgcctttccagccaagctctggagccaccagactcaaactcaagtcct 443
Query: 481 cagggcaacctccccagatctgcctggctctacctctctttctttgtcctgggatcacac 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 442 cagggcaacctccccagatctgcctggctctgcctctctttctttgtcctgggatcacac 383
Query: 541 actccaggcctctgcatatatagccaattatgggcccacctccactctctggtttacttc 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 actccaggcctctgcatatatagccaactatgggcccacctccactctctggtttacttc 323
Query: 601 ttactgagaaccg 613
|||||||||||||
Sbjct: 322 ttactgagaaccg 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1010
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1000
Effective search space: 603000
Effective search space used: 603000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
