Query= MSMg01no517_k21.b1 MSMg01no517_k21.b1 CHROMAT_FILE:
MSMg01no517_k21.b1 PHD_FILE: MSMg01no517_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:51 2005
(596 letters)
>mm_chr9_80543213_80544208
Length = 996
Score = 1075 bits (556), Expect = 0.0
Identities = 583/592 (98%), Gaps = 1/592 (0%)
Strand = Plus / Plus
Query: 5 gaattctttctggcacaatggttatgttctattattaaagttcttatgagaaagatcatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttctggcacaatggttatgttctattattaaagttcttatgagaaagatcatt 265
Query: 65 agttatttttttttatatcactgtgacctaatgtgtggcagaaacaacttaagggcaggt 124
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 266 agttatttttttt-atatcactgtgacctaatgtgtgacagaaacaacttaagggcacgt 324
Query: 125 ttgtttggttcacacttttagataacatagtccatcatggtggtaagaaggagtattgta 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 ttgtttggttcacacttttagataacatagtccatcatggtggtaagaagaagtattgta 384
Query: 185 gaatagatcaccatggcagaaacatgtggcagaggtgtctaacactgtaacagactagga 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 gaatagatcaccatggcagaaacatgtggcagaggtgcctaacactgtaacagactagga 444
Query: 245 agaaaagagtgtgtagaaccaagagcctgaccatagagatatacttctgcctactagatg 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaagagtgtgtagaaccaggagcctgaccatagagatatacttctgcctactagatg 504
Query: 305 ccagaagagggttctgaacccctagaactggaattacaaatgcttatgagctaccatgta 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 ccagaagagggttctgaacccctagaactggaattataaatgcttatgagctaccatgta 564
Query: 365 caggctgaggattgatcagagctcttcaggaagggtagctgctgagtctggcttgagcat 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggctgaggattgatcagagatcttcaggaagggtagctgctgagtctggcttgagcat 624
Query: 425 ggcaagaaccatgtgttatggtttctgcctcaagaacagagccatcaggacatgtgcctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcaagaaccatgtgttatggtttctgcctcaagaacagagccatcaggacatgtgcctc 684
Query: 485 tatgaatgttgatggttgttgtgagtgtaagtcttatttgtataaaaatatacaaatttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgaatgttgatggttgttgtgagtgtaagtcttatttgtataaaaatatacaaatttt 744
Query: 545 acttcatgttcctccttctggaattactctttctgccaaagttattggggga 596
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acttcatgttccttcttctggaattactctttctgccaaagttattggggga 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_k21.g1 MSMg01no517_k21.g1 CHROMAT_FILE:
MSMg01no517_k21.g1 PHD_FILE: MSMg01no517_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:51 2005
(486 letters)
>mm_chr9_80717303_80718188
Length = 886
Score = 845 bits (437), Expect = 0.0
Identities = 452/457 (98%)
Strand = Plus / Minus
Query: 1 tttgttcatgagctgtatcttttctctgttctttcgaagtatcccatcatcgttataggt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 457 tttgttcatgagctgtatcttttctctgttctttcaaagtatcccatcatcgttataggt 398
Query: 61 gtgttataggtcctggtgtctctcctttttcaaaaactgtttgaaatctttgctaagtgt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtgttatagggcctggtgtctctcctttttcaaaaactgtttgaaatctttgctaagtgt 338
Query: 121 cccatatctttaaaatggataattacttcattttggctactaaacacaatggcactgaac 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cccatatctttaaaatgcataattacttcattttggctactaaacacaatggcactgaac 278
Query: 181 cagctatttgatatcagggaacaaataaacatttctatatctagatgtgaccagctactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cagctatttgatatcagggaacaaataaacatttctatatctagatgtgaccagctactg 218
Query: 241 tttaaagtcaatctcaaagctggacttgatggtgtatgcctgtgatgctagcacttgcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tttaaagtcaatctcaaagctggacttgatggtgtatgcctgtgatgctagcacttgcca 158
Query: 301 ggtagggttaaggggatcagcatttctaagctagacaggtctgcctagagaggtcctgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 157 ggtagggttaaggggatcagcatttctaagctagacaggtctgcctagagaggccctgcc 98
Query: 361 ccacaaagaagagtaaaagaagcactcagtctcaaaataagcactgatagcactttgatt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 ccacaaagaagagtaaaagaagcactcagtctcaaaataagcactgatagcactttgatc 38
Query: 421 ctcatctggcagtttaaatattacataattatcccat 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 ctcatctggcagtttaaatattacataattatcccat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
