Query= MSMg01no519_j20.b1 MSMg01no519_j20.b1 CHROMAT_FILE:
MSMg01no519_j20.b1 PHD_FILE: MSMg01no519_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:22 2005
(641 letters)
>mm_chr9_15531684_15532724
Length = 1041
Score = 1164 bits (602), Expect = 0.0
Identities = 629/638 (98%), Gaps = 2/638 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagactaaggaaagatctgcagacagacatttgaaggcacatgggtagtctggg 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 841 gaattcaagactaaggaaagatctgcagacggacatttgaaggcacatgggtagtctggg 782
Query: 65 gaatgtgaaggttggggacagttgcggcacgtgcagaatttcatgatatgaaggtgacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaatgtgaaggttggggacagttgcggcacgtgcagaatttcatgatatgaaggtgacat 722
Query: 125 gtgatggggaagcaaggaccagagtgggccaggtgccaaggggtcttcatcatctgcgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtgatggggaagcaaggaccagagtgggccaggtgccaaggggtcttcatcatctgcgac 662
Query: 185 tgctgaaatgttctcaagcggacagatgctgtcatgccttgtgctcttccctctcctggg 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgctgaaatgttctcaagcgcacagatgctgtcatgccttgtgctcttccctctcctggg 602
Query: 245 ggagccacctttactgctccagcaagtctaacagctgggaggggagcctcagaaaggctc 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggagccacctttactgctccaccaagtctaacagctgggaggggagcctcagaaaggctc 542
Query: 305 aggcaaccctctcctcccggttagagaatccagagggaggaaacatgga-gcagatgcag 363
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 541 aggcaaccctctcctcccggttagagaatccagagggaggaaacat-gacgcagatgcag 483
Query: 364 cacgagtgtgtctgaactgctaatggaaatgttatgattaccttagaaggaacatagtta 423
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 482 cacgagtgtgtctgaactgctagtggaaatgctatgattaccttagaaggaacatagtta 423
Query: 424 atcgattagatcatgagaaaataaaacagggatcctcaactttcttgaggtcacttgtct 483
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 422 atcgattagatcacgagaaaataaaacagggatcctcaactttcttgaggtcagttgtct 363
Query: 484 ctgcctgatgtaactgggttaagagtcctgagacttcaaagagttacctcagttctcatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctgcctgatgtaactgggttaagagtcctgagacttcaaagagttacctcagttctcatt 303
Query: 544 acttcaaggtcttcaaacaaaggaagagtcacaaacttgtgtggtggcagcagagggcat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acttcaaggtcttcaaacaaaggaagagtcacaaacttgtgtggtggcagcagagggcat 243
Query: 604 gtggcatcaagcacaaaagcttaaagagttatactcac 641
||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtggcatcaagcacaaaagcttaaagagttatactcac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_j20.g1 MSMg01no519_j20.g1 CHROMAT_FILE:
MSMg01no519_j20.g1 PHD_FILE: MSMg01no519_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:23 2005
(627 letters)
>mm_chr9_15482547_15483571
Length = 1025
Score = 1170 bits (605), Expect = 0.0
Identities = 621/627 (99%), Gaps = 2/627 (0%)
Strand = Plus / Plus
Query: 1 caattcgaggctgctgcagtactgactggacagccctaccgatttctaacctttgtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattcgaggctgctgcagtactgactggacagccctaccgatttctaacctttgtctct 260
Query: 61 gagtcttcttttccatctttcccataagcctcactcaaccctcagggggctgcttgactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcttcttttccatctttcccataagcctcactcaaccctcagggggctgcttgactt 320
Query: 121 tgtacctgctggactggaagagtggggttagaaaaacagagaaccaaacccaggtgggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacctgctggactggaagagtggggttagaaaaacagagaaccaaacccaggtgggtt 380
Query: 181 tttggagaagcagcaggtgaaacagataagacttaataggaaaagaagcaaggaatggca 240
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tttggagaagcagcaggtaaaacaga-aagacttaataggaaaagaagcaaggaatggca 439
Query: 241 ggcccagaacaaattcctactgtgttgccaatggtttcattattaagatgaaatggttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcccagaacaaattcctactgtgttgccaatggtttcattattaagatgaaatggttcc 499
Query: 301 tctgtatgttcatcgtctgagcggcagacatgcagcctcagtgttcccatccctgcatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgtatgttcatcgtctgagcggcagacatgcagcctcagtgttcccatccctgcatca 559
Query: 361 tatctggctgtgtctccagctactgcagagcaggtggctgctcatgagatcaacatttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatctggctgtgtctccagctactgcagagcaggtggctgctcatgagatcaacatttct 619
Query: 421 attctgtatcatgctgagattttattctgagctgtttctctcgggcgttcagaatccttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attctgtatcatgctgagattttattctgagctgtttctctcgggcgttcagaatccttt 679
Query: 481 cctctaataatatcaactaaacaggctgtggcgcagtggagaaccttgacgaggaggtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctctaataatatcaactaaacaggctgtggcgcagtggagaaccttgacgaggaggtgg 739
Query: 541 tggcacattctccctagagcattcnaagacagagaaaacagagaanaggggttggggctc 600
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 740 tggcacattctccctagagcattcaaagacagagaaaacagagaaaaggggttggggctc 799
Query: 601 agtgtgtgatgcttagtatgtgcataa 627
||||||| ||||| |||||||||||||
Sbjct: 800 agtgtgtaatgct-agtatgtgcataa 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1025
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1015
Effective search space: 626255
Effective search space used: 626255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
