Query= MSMg01no520_m18.b1 MSMg01no520_m18.b1 CHROMAT_FILE:
MSMg01no520_m18.b1 PHD_FILE: MSMg01no520_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:57 2005
(553 letters)
>mm_chr9_27070481_27071432
Length = 952
Score = 1007 bits (521), Expect = 0.0
Identities = 539/545 (98%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 9 acaaaacaaaacaaaaacactctttagaattcccagttctgattggtctaacattgagag 68
|||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 209 acaaaacagaacaaaaacactcttgagaattcccaattctgattggtctaacattgagag 268
Query: 69 caatgacccttgaggtagcagtgaggattaaaccagcatcatacctggtctgtggcagtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caatgacccttgaggtagcagtgaggattaaaccagcatcatacctggtctgtggcagtt 328
Query: 129 ggttcttcctctcccattttgtggttactttctggtaggacaagatacaggcaagagagc 188
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggttcttcctctcccattt-gtggttactttctggtaggacaagatacaggcaagagagc 387
Query: 189 aatgtctactgggaacttgtccacacagtctccaaggaccacttccctcatgctcagtgg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatgtctactgggaacttgtccacacagtctccaaggaccacttccctcatgctcagtgg 447
Query: 249 attgtttataaacacccctactagatttttaccttctgtatagataggagttggagttta 308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 attgtttacaaacacccctactagatttttaccttctgtatagataggagttggagttta 507
Query: 309 ttatttcatgacacagccatgtatcatttactgatggggacagctcgttgttaagtaatt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttatttcatgacacagccatgtatcatttactgatggggacagctcgttgttaagtaatt 567
Query: 369 ctgctacttcacaaacttgagggtactgacacaactaaatgtcacgtgttactcagtgtg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctgctacttcacaaacttgagggtactgacacaactaaatgtcacgtgttactcagtgtg 627
Query: 429 gcctcttgatgcaatcacaagacacactgggcactagattcatgaagatgctgctatacc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcctcttgatgcaatcacaagacacactgggcactagattcatgaagatgctgctatacc 687
Query: 489 acagcttactgtgaacttttataaactaacaatagaaaggatagtatagaggagctgtgg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 688 acagcttactgtgaacttttataaactaacaatagaaaggatagtatagaggagctgggg 747
Query: 549 agacg 553
|||||
Sbjct: 748 agacg 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_m18.g1 MSMg01no520_m18.g1 CHROMAT_FILE:
MSMg01no520_m18.g1 PHD_FILE: MSMg01no520_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:57 2005
(638 letters)
>mm_chr9_27080774_27081811
Length = 1038
Score = 1212 bits (627), Expect = 0.0
Identities = 633/635 (99%), Gaps = 1/635 (0%)
Strand = Plus / Minus
Query: 1 acaaagatccacctattcctgtctacagaatggagtgatgatgaaaggaatgggccatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 acaaagatccacctattcctgtctacagaatggagtgatgatgaaaggaatgggccatca 917
Query: 61 tgccctgctgtc-tttttttttttctcttgattagctaagacccacattgtggagggtgc 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tgccctgctgtcttttttttttttctcttgattagctaagacccacattgtggagggtgc 857
Query: 120 tacagtttggatcttgaatgtcccccaaaaggcccaagtattgaaggcttgatcatcagc 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 856 tacagtttggatcttgaatgtcccccaaacggcccaagtattgaaggcttgatcatcagc 797
Query: 180 ttgtagtactctaagaatgtgtaatctttaagagttggggtctaatgggaggaagctgtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttgtagtactctaagaatgtgtaatctttaagagttggggtctaatgggaggaagctgtg 737
Query: 240 tcactgagaggccatccttgaggaggagatttgcatcctgtcctccctacctctcctttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcactgagaggccatccttgaggaggagatttgcatcctgtcctccctacctctcctttc 677
Query: 300 ttcctagttgccatgagatgagccgccccttatatgatatactgcaattgtcacagtccc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttcctagttgccatgagatgagccgccccttatatgatatactgcaattgtcacagtccc 617
Query: 360 aaagcagcgggaccaaatcagtctaaaaccaaaggaggtttcagagacaatggaaatatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaagcagcgggaccaaatcagtctaaaaccaaaggaggtttcagagacaatggaaatatt 557
Query: 420 tcctatttcttttaaattattttttattattcatttatttatttatttaatacatatgca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcctatttcttttaaattattttttattattcatttatttatttatttaatacatatgca 497
Query: 480 ctgccatgcatgcatgtagttgctggggattgaactcaggacctctggaagagtagccag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctgccatgcatgcatgtagttgctggggattgaactcaggacctctggaagagtagccag 437
Query: 540 tgctcttaaccgctgagccatcatctctccagcccagcatcctctattctcaaactgatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgctcttaaccgctgagccatcatctctccagcccagcatcctctattctcaaactgatt 377
Query: 600 atctcaagtattttgtcactgcgataaaaatctga 634
|||||||||||||||||||||||||||||||||||
Sbjct: 376 atctcaagtattttgtcactgcgataaaaatctga 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
