BAC Information

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BAC

Clone NameMSMg01-521F01
Chromosome9 (Build37)
Map Location 98,277,280 - 98,277,920
singlet/doubletsinglet
Overlap geneNmnat3
Upstream geneClstn2, LOC667298
Downstream geneRbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521F01.T7 (MSMg01no521_f01.b1)MSMg01-521F01.TJ (MSMg01no521_f01.g1)
ACCAG592139AG592140
length736736
length of high quality
(start - end)
33 (339 - 371)643 (83 - 725)
definitionCHROMAT_FILE: MSMg01no521_f01.b1 PHD_FILE: MSMg01no521_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:36 2005CHROMAT_FILE: MSMg01no521_f01.g1 PHD_FILE: MSMg01no521_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGACCGATAATTGCGGCGCTAAACAAATCCTATTTCGAAAGAATCCGG
AAATTAATATATTTCGGCTCTGGTGTATCTCTTTTTTCTATCTCTAGGTG
TACCTGATCCTCTGTAATCTAAACATAAAAAGCTTTAAGAATCATCTCTC
GTGCCAGTTGTAACTCACTCTCGACACTCATATAACTGTCCATAACTGAT
AGAATCTTTACATCAACTAACAAACACAGGCAAGACCACTTTATCCTCAT
CACTAGTAAACACAACAACAAAGAATCATGGAACACGCCCAAATATTGCT
GCTCACTCTTCATTTTCTAAATAACGGGCCAAACACCAGAACTTCATAGC
TTTTGCAACTCATTTTGAATTTTTTCTCTTTTAATTTACTTGCTTGAATT
TTTAATCATTCCCTCTCTATCAATAACAATGCAACAATATTTATATATGT
TGTGCTCAGTATTCCAAATAGCTCATCCAAATAAAATCACTCCCATTTGC
CTCAATCTCTGAGAAAATTTGTGATGAAAGAATATCATGGTATTACAACA
TGATTGATAGGATAACCCTAACTATGTTCTCAAATTCATTTATAATCTGG
CAAGGGATCTACGAACTACCCTACTAATATCATCATAAACCCCTTTATAA
AAAACCCATTTTCTAATGAGCATAACCTCTGGATAGAGCACCTGGAGCTT
TTCTTACCATCCCAGTCATGAATGTAATAAAATATG
NNNNTTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGAAACTGGACCTT
AGGAAGCAGGCGAAGTGGCAGGCTCCATACCTGGTTATTTGATCATCAGG
AGAACCCGCTTTGCAGGGGTTCCACAAAACAGAGGAGGACAAGGCAGATT
TGAGTTACTTCCCCATGAGCTAAAGGACCATATCCCCAATCAGAAAAGCC
TGCTGACAACCCATCCCTACCGAGCCCTCACATCGGCTTTCCAGATCTAA
GGCCCCCAAGGAGAAGAGGGTGGTCAGTTTCTGAGAAGCCACAAGACCCT
GGCACACACCTATATTCCCAGCACTTATTAGGTAGAGGCAGGGGGATAGG
GAGCTTGAACCTCAGTGCAGGCCAACCTGGGCTACATGAGACACATTTCA
GAATAAGTAAGTAAACGAAACAAAAGAAGTTAGATCCACTTGCGGCAGAA
AGACCTAACTCCTACATCTTGTATTTACCTAGAAGTTTAGCACTGTTAAA
AACTGCTTAAAAAAATATGTAAAGTTTCCTAAACCTGTACTATAAGCACC
GTTTAGTTTGTTTTGTTTTTTTTTCTCAAGTAAACAGAACTGGGGGAGTA
GCCATATGGCCCCGGAATGACAACTGGTAGAACTTTCCCTTATGTCCGTG
TGCCTAACATGAAGCTCTCCACCTAGAGCTGCCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_f01.g1 MSMg01no521_f01.g1 CHROMAT_FILE:
MSMg01no521_f01.g1 PHD_FILE: MSMg01no521_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:37 2005
         (643 letters)



>mm_chr9_98277080_98278120
          Length = 1041

 Score = 1164 bits (602), Expect = 0.0
 Identities = 633/644 (98%), Gaps = 4/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaggaaa-ctggaccttaggaagcaggcgaagtggcaggctccatacctggttatttg 59
           ||||||||| || ||| ||||| |||||  ||||||||||||||||||||||||||||||
Sbjct: 201 tctaggaaacct-gactttagggagcagatgaagtggcaggctccatacctggttatttg 259

                                                                       
Query: 60  atcatcaggagaacccgctttgcaggggttccacaaaacagaggaggacaaggcagattt 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 atcatcaggagaacccgctttgcaggggttcaacaaaacagaggaggacaaggcagattt 319

                                                                       
Query: 120 gagttacttccccatgagctaaaggaccatatccccaatcagaaaagcctgctgacaacc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagttacttccccatgagctaaaggaccatatccccaatcagaaaagcctgctgacaacc 379

                                                                       
Query: 180 catccctaccgagccctcacatcggctttccagatctaaggcccccaaggagaagagggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catccctaccgagccctcacatcggctttccagatctaaggcccccaaggagaagagggt 439

                                                                       
Query: 240 ggtcagtttctgagaagccacaagaccctggcacacacctatattcccagcacttattag 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtcagtttctgagaagccacaagaccctggcacacacctatattcccagcacttattag 499

                                                                       
Query: 300 gtagaggcagggggatagggagcttgaacctcagtgcaggccaacctgggctacatgaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtagaggcagggggatagggagcttgaacctcagtgcaggccaacctgggctacatgaga 559

                                                                       
Query: 360 cacatttcagaataagtaagtaaacgaaacaaaagaagttagatccacttgcggcagaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cacatttcagaataagtaagtaaacgaaacaaaagaagttagatccacttgcggcagaaa 619

                                                                       
Query: 420 gacctaactcctacatcttgtatttacctagaagtttagcactgttaaaaactgcttaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacctaactcctacatcttgtatttacctagaagtttagcactgttaaaaactgcttaaa 679

                                                                       
Query: 480 aaaatatgtaaagtttcctaaacctgtactataagcaccgtttagtttgttttgtttttt 539
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||
Sbjct: 680 aaaatatgtaaagtttcctaaacctgtactataaacaccgtttagtttgtttt--ttttt 737

                                                                       
Query: 540 tttctcaagtaaacagaactgggggagtagccatatggccccggaatgacaactggtaga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttctcaagtaaacagaactgggggagtagccatatggccccggaatgacaactggtaga 797

                                                       
Query: 600 actttcccttatgtccgtgtgcctaacatgaagctctccaccta 643
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 actttcccttatgtccgtgtgcctaacatgaagctctccaccta 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1041
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1031
Effective search space:   652623
Effective search space used:   652623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)