Query= MSMg01no521_l04.b1 MSMg01no521_l04.b1 CHROMAT_FILE:
MSMg01no521_l04.b1 PHD_FILE: MSMg01no521_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:07 2005
(611 letters)
>mm_chr9_82758087_82759099
Length = 1013
Score = 1129 bits (584), Expect = 0.0
Identities = 603/610 (98%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagcaggctctttcaggtgattaattttgctttctatcaaagctagaccctaaa 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 204 ggaattcagcaggctctttcaggtgattaattttgctttctatcaaagctagaccccaaa 263
Query: 64 ttaaaaaaaaaa--ttagaatttgaagatgtttgacattaaaactatctttgagaaatca 121
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaaaaaaaaaaattagaatttgaagatgtttgacattaaaactatctttgagaaatca 323
Query: 122 gcttggaaaatgatgtttattcttttttaatcaacagcaaacaactgttattgtaatata 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcttggaaaatgatgtttattcttttttaatcaacagcaaacaactgttattgtaatata 383
Query: 182 ttgttccagcacatcaaagctcccaggggggtccagcaaatgtcacctcctgcagtgtgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgttccagcacatcaaagctcccaggggggtccagcaaatgtcacctcctgcagtgtgg 443
Query: 242 ctaaaagacagcttgcttagtgctgaacatcaaacggtaaatttaagaggcaaatacaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaaaagacagcttgcttagtgctgaacatcaaacggtaaatttaagaggcaaatacaaa 503
Query: 302 ggttaagaattcgacaagactgagataagctgtttggatagattagactttgaagattga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggttaagaattcgacaagactgagataagctgtttggatagattagactttgaagattga 563
Query: 362 attcactgacagtaaagatcaaacatgcaacaacagccttgctatgttactcagtcctta 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 attcactgacagtaaagatcaaacatgcaacaacagccttgctacgttactcagtcctta 623
Query: 422 ccgatctgcaaagccaaactcccatttttccaatttgaagaccagacttccatttcatca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccgatctgcaaagccaaactcccatttttccaatttgaagaccagacttccatttcatca 683
Query: 482 tgcttagcatgtttaactggcctgaaagataataatgaattggattctccctacaactct 541
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcttagcatgtctaactggcctgaaagataataatgaattggattctccctacaactct 743
Query: 542 cctccccatagtaaccaacatacggtaactgtgttaagttcagaactgcaaggtcctgta 601
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 744 cctccccatagtaaccaacttacggtaactgtgttaggttcagaactgcaaggtcctgta 803
Query: 602 attaagcttg 611
||||||||||
Sbjct: 804 attaagcttg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1013
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1003
Effective search space: 602803
Effective search space used: 602803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l04.g1 MSMg01no521_l04.g1 CHROMAT_FILE:
MSMg01no521_l04.g1 PHD_FILE: MSMg01no521_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:07 2005
(659 letters)
>mm_chr9_82902722_82903780
Length = 1059
Score = 505 bits (261), Expect = e-147
Identities = 267/269 (99%)
Strand = Plus / Minus
Query: 391 agagagagagagagagagagagactagaagtggtataaattttacaatttcaatatgcct 450
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1026 agagagagagagagagagagagactagaagtggtataagttttacaatttcaatatgcct 967
Query: 451 cctgtgacatacttcctccaacaaggccttacctcttaaatgtccccatatagcaccacc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 cctgtgacatacttcctccaacaaggccttacctcttaaatgtccccatatagcaccacc 907
Query: 511 aagtgttaaatacataagcccatgcaggacattctcaaaccaccacactgatctagcttt 570
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aagtgttaaatacataagctcatgcaggacattctcaaaccaccacactgatctagcttt 847
Query: 571 tttcttatgataatgcttaatattaaggtaatattaagagacagttactgtctccagact 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tttcttatgataatgcttaatattaaggtaatattaagagacagttactgtctccagact 787
Query: 631 aatgaattccaacccagcccatcttatct 659
|||||||||||||||||||||||||||||
Sbjct: 786 aatgaattccaacccagcccatcttatct 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
