BAC Information

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BAC

Clone NameMSMg01-522A24
Chromosome9 (Build37)
Map Location 33,103,686 - 33,104,122
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522A24.T7 (MSMg01no522_a24.b1)MSMg01-522A24.TJ (MSMg01no522_a24.g1)
ACCAG592710AG592711
length759759
length of high quality
(start - end)
563 (49 - 611)532 (81 - 612)
definitionCHROMAT_FILE: MSMg01no522_a24.b1 PHD_FILE: MSMg01no522_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:34 2005CHROMAT_FILE: MSMg01no522_a24.g1 PHD_FILE: MSMg01no522_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAATNNNNNNNTTGGGGGGCGGCTATACGACTCACTATTTTCAGAG
GATCCGCGGAATTCTTCTGATTAACTTTTCAAAAAAGTAACAAATTATGA
CAAAGATAAGGAGAAAAAAATAGTTATTCACCATTAGAAGTCATCAAAAT
TAGCATATTATTTGTACAGAGTAGGATAAATTTTTTCAAAAATTAAGTGA
TCTACAATAATACAGCTGTCCTACTCCTGAGTACATGTATCCAAAGATAT
AAAATTAACACAGCAAAAAGGGAAATGTGTGTCCATGTTTATTGTTGTAG
TATTGAAGATAGTTACGGCATGGAATTGTCCTAGGGTATCTGTTCTAGTT
ACACTTCTATTGCTGTGATAAAACACTAACAGCAAACAGCTCAGGGAAGA
AAGCATTCATTTCATTTTACACTATATAGTCCATCATTCAGGGAAGCCAA
GTCAAGGACTTGAGGAGGGAGGAACTAAAGCCGAGACCATAGAGGAATGC
TGCCTACTGGCTTATCCCAGACTCCCACTGTATTATCTTTCTTGCACCTA
CCAGGAGTGGCTCCACCCAAGGTGAGCTGACCCTTACCCATCAATCAATA
ATTAAGAAGAAAGTGTCACACACACATACAAACACACAGGCACACACACA
CACCCCCNNAATGNNANANANAGAGAGAGAGAGAGAGAGAGAGCCCAATA
TGATGTAAGAAATCTTTTCAATCAGATTTCTTTTTCGCCAGGTGTGGCAA
GTTAACCAC
NTTTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACGCCCTGCCCTCTCCCC
ACCCCCAACTGCCTGCCTGCACCAAGGCTGGCTGTACTTTGTGTCAGATC
AAGTAACACCGTGCTCAGAGTTTCTCTCACTCCCCAGGGAGCCTCTCTTC
TGGCAGCGTGTGGACCAAGCTCTGGGGATTTCATGGAATTGCAAAAGCAA
TCAGGTTCCTATCTGTGTATACTGCTGCTGGCTCTTGGCTACCGCCACAT
TGCTGAGCCTGGGAGGGTGTGGTGGGGATATAGTTTTCAATCTGAATTTT
ACTCTCTCAGTCAGTTTCAGTTTTTGTTTTTGATTTTCCTCCTGGAGAGA
TGATTTCTTTTCTCAGTTCTTTCTGCAGCCTTTATTTTGCTGGAATTCTG
AACTCATTCCTTTTTGTTTTCCCTATAGTTTATTGCTTCACAGGAAGGGT
TGGTCATTTTACTGAGGTGCCTTGAAAGGAATTTGGGACCTTGGCCCTTG
GTTTTTCTTTTCTTCTCTTCACTATCATGAGGTGAACAGCTCTCTTCTTC
CATGCACTGCTTCCATGATACACAGGCTCAGAGCAACATCATCAAATGAC
AATGGACCAAAATAACTGAAACCATGGGCCTAAAACAAACCTTCATCTAT
GGTAAACATGATGATCTTAGGAGATTGGTTGCATTACCCAAGAAAATGAC
TAACCCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_a24.g1 MSMg01no522_a24.g1 CHROMAT_FILE:
MSMg01no522_a24.g1 PHD_FILE: MSMg01no522_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:34 2005
         (532 letters)



>mm_chr9_33103486_33104417
          Length = 932

 Score =  748 bits (387), Expect = 0.0
 Identities = 425/439 (96%), Gaps = 4/439 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacgccctgccctctccccac--ccccaactgcctgcctgcaccaaggctggctgtact 58
           |||| |||||||  ||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacaccctgcc--ctccccacatccccaactgcctgcctgcaccaaggctggctgtact 258

                                                                       
Query: 59  ttgtgtcagatcaagtaacaccgtgctcagagtttctctcactccccagggagcctctct 118
           |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct: 259 ttgtgtcagatcaagtaacaccatgctcagagtttctctgattccccagggagcctctct 318

                                                                       
Query: 119 tctggcagcgtgtggaccaagctctggggatttcatggaattgcaaaagcaatcaggttc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 tctggcagcgtgtggaccaagctctggggatttcatggaattgcaaaagcaatcgggttc 378

                                                                       
Query: 179 ctatctgtgtatactgctgctggctcttggctaccgccacattgctgagcctgggagggt 238
           ||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 ctatctgtccatactgctgctggctcttggctactgccacattgctgagcctgggagggt 438

                                                                       
Query: 239 gtggtggggatatagttttcaatctgaattttactctctcagtcagtttcagtttttgtt 298
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 439 gtggtggggatatagttttcaatctgaatttcactctctcagtcagtttcagtttttgtt 498

                                                                       
Query: 299 tttgattttcctcctggagagatgatttcttttctcagttctttctgcagcctttatttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttgattttcctcctggagagatgatttcttttctcagttctttctgcagcctttatttt 558

                                                                       
Query: 359 gctggaattctgaactcattcctttttgttttccctatagtttattgcttcacaggaagg 418
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcgggaattctgaactcattcctttttgttttccctatagtttattgcttcacaggaagg 618

                              
Query: 419 gttggtcattttactgagg 437
           |||||||||||||||||||
Sbjct: 619 gttggtcattttactgagg 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)