BAC Information

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BAC

Clone NameMSMg01-522E24
Chromosome9 (Build37)
Map Location 34,121,193 - 34,121,498
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522E24.T7 (MSMg01no522_e24.b1)MSMg01-522E24.TJ (MSMg01no522_e24.g1)
ACCAG592900AG592901
length770754
length of high quality
(start - end)		523 (57 - 579)575 (84 - 658)
definitionCHROMAT_FILE: MSMg01no522_e24.b1 PHD_FILE: MSMg01no522_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:53 2005CHROMAT_FILE: MSMg01no522_e24.g1 PHD_FILE: MSMg01no522_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTAAGGGGNCCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCTGGCACATACCAAAACATAATAAAAGCAACATA
TAGCAAGTGAACAGCCAACATCAAATTAAATGGAGAGAAAATTGAAGCAA
TCCTACTAAAATCAGGGACAAGACGAGGCTTCCCACTCTCTCTTTTTACT
CAATATAGTACTTGAAGTTCTATCTAGAGCAATAAGACAACAAAATTATC
AAGGGGATACAAATGAGAAAGGAAGAAGTCAAGGTACCATTATTCTCAGA
TGATATGATAGTATACATAAGCAACAACAAACATTCTATCAGAGAACTCC
TACAGCTAATGAACAACTTCATCAAAGTGGCTGGATATAAAATTAACTCA
AACAAATCAGTGGTGTTTCTCTACACAAAGGTTAAACAGGCTGAGAGAGA
AATTAGGGAAACAAGACCCTTCACAATAATCCCAAATACTATAAAATACC
TTGGTGTGACTCTAATCAAGCAAATAGAAGACCTGTGTGAAAAGAATTTC
AAGTCCCTGAAGAGAGAAATCCAAGAAGACCTCATAAGATGGAAAGATCT
CCCATGCTCATGGATTGGTAAGATTAACATATTGAAAATGGCCATCTTAC
CAAAGCAATCTAGAGATTCAATGCAAATCTCAACAAAATTTCAACACAAT
TCTTTACAGACATGGAAAGAACAGTTCTAAACTCATATGGTAAAACAAAA
AACTCAGGATAGCCAAACAA

NTTGAAAACCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTCTACTCAGTGC
AGAATTCTGGCCCTTCAAATGGGCTTGTTGGACAAAACCTGGTACTTTAA
TCCACAAACGTGATAGCAAGGGTAGGAATGCCTCCTGCTTTGGTTATTTT
TCATCAACTTGACATAAGTTAGAGTCACCTGGGAAGAGGGAAACTCAATT
GAGAAGATACCCCTATCAGATTATGTTGTATGCTAGTCTGTGGAACATTT
TCTTGATTAATGAATGATGTGGAGATCCCAGCCTGGTGTGGGCATTACTA
CCCCTAGGCAGGTGGGCCTGGTTATATAGAAAAACAATCAGACTCAGCCA
TGAAGACCAGGCAGTAAGCATCGTTCCTCTATGTGTTTTCATACCTCTGC
ATTTGTTTGAGTTCCTGCTCTGACTTCCCTCAAATGATGGACTGTGATTG
GGATGTGTAAGCCAATTAAACCCCTCACTCCCCAAATTATGTTCAGTCAT
GATGTTTATCACAGGATTAGAAAGCAAACTAGAACCCACTCTGAAAGGAT
GTTCTGCAAATCCTCTGAAATCCTGCTGAAGCTGAGGCACTTGAGTACTG
ACCATGGGTTGGCTACTAGAGACACTGTGATAGAGAACCAATGAGGGGCC
TGCTTCATCTCAGGCTCTGTGACTGCACAACGATGTGCCACTAAGTCTGC
TTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_e24.g1 MSMg01no522_e24.g1 CHROMAT_FILE:
MSMg01no522_e24.g1 PHD_FILE: MSMg01no522_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
         (575 letters)



>mm_chr9_34121193_34122167
          Length = 975

 Score =  553 bits (286), Expect = e-161
 Identities = 301/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctctactcagtgcagaattctggcccttcaaatgggcttgttggacaaaacctggt 60
           |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 306 tttcctctactcagtgcagaatgctggcccttcaaatgggctggttggacaaaacttggt 247

                                                                       
Query: 61  actttaatccacaaacgtgatagcaagggtaggaatgcctcctgctttggttatttttca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 actttaatccacaaacgtgatagcaagggtaggaatgcctcctgctctggttatttttca 187

                                                                       
Query: 121 tcaacttgacataagttagagtcacctgggaagagggaaactcaattgagaagatacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tcaacttgacataagttagagtcacctgggaagagggaaactcaattgagaagatacccc 127

                                                                       
Query: 181 tatcagattatgttgtatgctagtctgtggaacattttcttgattaatgaatgatgtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tatcagattatgttgtatgctagtctgtggaacattttcttgattaatgaatgatgtgga 67

                                                                       
Query: 241 gatcccagcctggtgtgggcattactacccctaggcaggtgggcctggttatatagaaaa 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 66  gatcccagcctggtgtgggcattacgacccctaggcaggtgggcctggttatatagaaaa 7

                 
Query: 301 acaatc 306
           ||||||
Sbjct: 6   acaatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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