Query= MSMg01no525_o21.b1 MSMg01no525_o21.b1 CHROMAT_FILE:
MSMg01no525_o21.b1 PHD_FILE: MSMg01no525_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:42 2005
(614 letters)
>mm_chr9_23240987_23242000
Length = 1014
Score = 1149 bits (594), Expect = 0.0
Identities = 600/602 (99%)
Strand = Plus / Minus
Query: 13 cttgtttatgttcttttgggttatcccctacctttaaaacttgcaacagtctagaccaca 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 cttgtttatgttcttttgggttatcccctacctttaaaacttgcaacagtctagaccaca 955
Query: 73 gttttaaacattacaaacatttgttgaacatctaccctttgcagaatttgtatgtagtgt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 gttttaaacattacaaacatttgttgaacatctaccctttgcagaatttgtatgtagtgt 895
Query: 133 tttagatgtattattccacataatcactacaagtatcttgtgaagagaaagtaataccct 192
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 894 tttagatgtattattccacataatcactacaagtatcttgtgaagagaaggtaataccct 835
Query: 193 cttgtacactttagagatgaacttgagcccagctaggaagtcttctattgtatataggaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 cttgtacactttagagatgaacttgagcccagctaggaagtcttctattgtatataggaa 775
Query: 253 ggacaagggcaggatatgagtgagcctcaattttagctgttacaccaaacatcaacacac 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ggacaagggcaggatatgagtgagcctcaattttagctgttacaccaaacatcaacacac 715
Query: 313 cagaaactcaaatgtgtatgagctcctaaactgagcaccaaacatatgtcacgaagcttc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cagaaactcaaatgtgtatgagctcctaaactgagcaccaaacatatgtcacgaagcttc 655
Query: 373 cagcagacaaggcccacagtgacacgaaatgcaaaggaatcccattggaaaacagcctgg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cagcagacaaggcccacagtgacacgaaatgcaaaggaatcccattggaaaacagcctgg 595
Query: 433 agcagaactgcctggatttagtgtttaatgacaagaacacaggagagaggagaaaaacac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agcagaactgcctggatttagtgtttaatgacaagaacacaggagagaggagaaaaacac 535
Query: 493 ctgggccggggttggtgttggatttctattttacttccgaaaaaaactgaatctaagtcc 552
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctgggccggggttggtgttgggtttctattttacttccgaaaaaaactgaatctaagtcc 475
Query: 553 aaattacataacactccgaatggcttgcttagccagttgcctctgttccagtttagtctc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaattacataacactccgaatggcttgcttagccagttgcctctgttccagtttagtctc 415
Query: 613 ca 614
||
Sbjct: 414 ca 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_o21.g1 MSMg01no525_o21.g1 CHROMAT_FILE:
MSMg01no525_o21.g1 PHD_FILE: MSMg01no525_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:42 2005
(523 letters)
>mm_chr9_23053215_23054136
Length = 922
Score = 934 bits (483), Expect = 0.0
Identities = 513/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 1 ctgtctgagcagttttgagactgcatatgtgaaacaccaccacgtgtgctttagataagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtctgagcagttttgagactgcatatgtgaaacaccaccacgtgtgctttagataagg 260
Query: 61 cctttaggaatcgtctgcagggtcagagtgtcccatgatcctcacccatttccacggctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttaggaatcgtctgcagggtcagagtgtcccatgatcctcacccatttccacggctt 320
Query: 121 ctaatctgcagggaattctttccaatatcctttttgcagataagatgcttgaagctcgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaatctgcagggaattctttccaatatcctttttgcagataagatgcttgaagctcgaa 380
Query: 181 tttatccctgttccacagaatggagtggagtgagccatgagagaactgcttcatctctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatccctgttccacagaatggagtggagtgagccatgagagaactgcttcatctctca 440
Query: 241 cagttgccaggattatggacaagtgcttttctctagcagctgaaaatagagggtctggag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cagttgccagggttatggacaagtgcttttctctagcagctgaaaatagagggcctggag 500
Query: 301 gcattggagatagatgcatgtcttccccctggatgtttgcatctggatgggggaggcatt 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gcattggagatagatgcatgtcttcaccctggatgtttgcatctggatgggggaggcatt 560
Query: 361 ggggatggatgcatgccttccccctggatgtttgcatctggatggggggaggcattgggg 420
|| ||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ggagatagatgcatgtcttcaccctggatgtttgcatctggatggggg-aggcattgggg 619
Query: 421 atggatgtgtgtctgctcttctggatgtttgcattcggatggggatgtttgaaggctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atggatgtgtgtctgctcttctggatgtttgcattcggatggggatgtttgaaggctttt 679
Query: 481 ctataggtcccttccccaagttagattatcatgatgaaatggc 523
||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 680 ctataagtcccttccccaagttagattatcgtgatgaaatggc 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space: 467856
Effective search space used: 467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
