Query= MSMg01no525_p03.b1 MSMg01no525_p03.b1 CHROMAT_FILE:
MSMg01no525_p03.b1 PHD_FILE: MSMg01no525_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:43 2005
(686 letters)
>mm_chr9_86712781_86713869
Length = 1089
Score = 959 bits (496), Expect = 0.0
Identities = 602/658 (91%), Gaps = 40/658 (6%)
Strand = Plus / Minus
Query: 9 gaattcctaaggattaaattttctcttacagaaaaaaataaataaacataggaatttaac 68
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 645 gaatttctaagaattaaattttctcttacggaaaaaaataaataaacataggaatttaac 586
Query: 69 a---g-----acctgcgagtatgg---------acc-------atagcaccacataaatg 104
| | ||||| |||||||| ||| ||| |||||||||||||
Sbjct: 585 acccgtctccacctgagagtatgggccataaacacctgtgcatataccaccacataaatg 526
Query: 105 atttgtgagcatcaatgacgttttcaaatgatatttaaagtactatttcaaagagtaaga 164
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 525 atttgtgagcatcaatgacgttttcagatgatatttaaagtactatttcaaagagtaaga 466
Query: 165 -aatgtgttcctcagctgaaatgtttcttctcagcactaggagtggtttctgagatctaa 223
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaatgtgttccccagctgaaatatttcttctcagcactaggagtggtttctgagatctaa 406
Query: 224 tctaaaatctgaattattgttgta--tttttttaagttgattttatgaccggtagcatat 281
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 tctaaaatctgaattaccgttgtatttttttttaagttgattttatgaccggtagcatat 346
Query: 282 aaatgataggtggatgcatttttttctttactctgaatatcaccataagctatggtgttt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatgataggtggatgcatttttttctttactctgaatatcaccataagctatg------ 292
Query: 342 ttttattatttatttcaaaaaataattctcataatactgtttcctgtttggagtgtgtgg 401
| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 291 ----a--atttatttcaaaaaataattctcataa-agtgtttcctgtttggagtgtgtgg 239
Query: 402 gttccaagttttaaactctgtttatgaaaagctcttaggttttgatggccaagagttttg 461
||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 238 gttccaaattttaaactccgtttatgaaaagctcttaggttttgatggccgagagttttg 179
Query: 462 gctatcccaaaagctgctcgttttaaaaattatatcattgatgattctgtgacacattta 521
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gctaacccaaaagctgctcgttttaaaaattatatcattgatgattctgtgacacattta 119
Query: 522 ttattattacctgtcacctgattgaccttatccacgtggctgtttttctgaaataaggag 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttattattacctgtcacctgattgaccttatccacgtggctgtttttctgaaataaggag 59
Query: 582 ataaagatgctactgactctcagtattcctttaagtttctctcgccccagcagacgca 639
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ataaagatgctactgattctcagtattcctttaagtttctctcgccccagcagacgca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1089
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1079
Effective search space: 729404
Effective search space used: 729404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_p03.g1 MSMg01no525_p03.g1 CHROMAT_FILE:
MSMg01no525_p03.g1 PHD_FILE: MSMg01no525_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:43 2005
(586 letters)
>mm_chr9_86565813_86566797
Length = 985
Score = 1011 bits (523), Expect = 0.0
Identities = 568/583 (97%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 1 tctcctcacggaccatttccaggtgaacaggcctcataaagtgcactactgaccttccag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tctcctcacggaccatttccaggtgaacaggcctcacaaagtgcactactgaccttccag 260
Query: 61 agctcacggtcagagtaacccacacatgagccaccttgacacggtcctcaccgagcaaga 120
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct: 261 agctcacggtcagagtaacccacacatgaaccaccttgacatggtccttaccgagcaaga 320
Query: 121 acacaagcagttcctaagccagaggctgcacagaaggaagaaacagaaccttatagtgtc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 acacaagcagttcctaagccagaggctgcacagaaggaagaagcagaaccttatagtgtc 380
Query: 181 agaataaattgagcacaaaataaatgaaaggaaaagtgaccttaaagtccaatggttcac 240
||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 381 agaataaattgagcacaaaataaatgaaa-gaaaagtgaccttaaaatccaacggttcac 439
Query: 241 aataaacccactgctaggatctcattcagagcaggtatcaccaacaactatccaaaacca 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 aataaacccactgctaggatctcattcagagcaggtatcaccaataactatccaaaacca 499
Query: 301 ctcaactttatccagtgttgaaggtgggggaagcatattccaatagcagtcagaaaagct 360
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 ctcaactttatccagtgttggaggtgggggaagcatattccaatggcagtcagaaaagct 559
Query: 361 ctggaaagtactgtgtccctccaaggacgtccatccagcaactgcagttctccgttctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctggaaagtactgtgtccctccaaggacgtccatccagcaactgcagttctccgttctat 619
Query: 421 gtctctcccacgaagaaggatgctgccttctacacagaagacttgggagtaagtgaagaa 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtctctcccacaaagaaggatgctgccttctacacagaagacttgggagtaagtgaaggc 679
Query: 481 gtgaatcgtgcaggcttgggtctcttacttcctctactctcagatgactgcgtaactgtt 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgaatcgtgcaggcttgggcctcttacttcctctactctcagatgactgcgtaactgtt 739
Query: 541 actgctacagtcactttttttggacagagcacaatatgttagt 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actgctacagtcactttttttggacagagcacaatatgttagt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
