Query= MSMg01no528_m12.b1 MSMg01no528_m12.b1 CHROMAT_FILE:
MSMg01no528_m12.b1 PHD_FILE: MSMg01no528_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:29 2005
(687 letters)
>mm_chr9_103959749_103960830
Length = 1082
Score = 1218 bits (630), Expect = 0.0
Identities = 671/686 (97%), Gaps = 8/686 (1%)
Strand = Plus / Minus
Query: 4 ggaattctggcatcgagctgcagacacctgcattttcagtgactcttccatgactcactg 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggaattctggcagcgagctgcagacacctgcattttcagtgactcttccatgactcactg 624
Query: 64 gatacctaggtttgtaaactcagactaaatggatgagtttcaggaattctttcttatgtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 623 gatacctaggtttgtaaactcagactaaatggatgagtttcaggaattctttcttctgtc 564
Query: 124 attaaaacatgaacaagaagctaactgaagaagtttagtgggaaatagtgctttggagac 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 attaaaacatgaacaagaagctaact---gaagtttagtgggaaatagtgctttggagac 507
Query: 184 ccagagcccatttctatctctgcaagtgtctgcatcagctgcaatgctttccagatgtgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccagagcccatttctatctctgcaagtgtctgcatcagctgcaatgctttccagatgtgc 447
Query: 244 tgcaggctggagagttgatatcagctctctgtgacctaagccaagtagcagcagagtaac 303
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcaggctggagagttgctatcagttctctgtgacctaagccaagtagcagcagagtaac 387
Query: 304 agcctccacttcttagtacaaagtcgactagagccacatactcattt-aaactctctctc 362
|||||||||||||||||||||||||||||||||||||| |||||||| |||| | |||||
Sbjct: 386 agcctccacttcttagtacaaagtcgactagagccacacactcatttaaaac-c-ctctc 329
Query: 363 accaagcagatactactgaatgagccgaggtttagggacttggggttataaagggcctaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 accaagcagatactactgaatgagccgaggtttagggacttggggttataaagggcctaa 269
Query: 423 gtggccctttgctagcagcctattgaaggctctctgcgtgttgtcataggctttgttttc 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtggtcctttgctagcagcctattgaaggctctctgcgtgttgtcataggctttgttttc 209
Query: 483 ctccct-gggataaagctttgtggtagaacagttgcctagcatgttcaaaccccagcact 541
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 c-ccctggggataaagctttgtggtagaacagttgcctagcatgttcaaaccccagcact 150
Query: 542 gcacaaaaagaaaaaggaaaaggataaaatctcatttttatagattctaacctgttcttt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gcacaaaaagaaaaaggaaaaggataaaatctcatttttatagattctaacctgttcttt 90
Query: 602 ctgataagaaaagagaaattctgctcattttaagtgacacgtatgcatggcaaacattga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ctgataagaaaagagaaattctgctcattttaagtgacacgtatgcatggcaaacattga 30
Query: 662 agtagacctaaggtaacagtaactaa 687
||||||||||||| ||||||||||||
Sbjct: 29 agtagacctaaggaaacagtaactaa 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1082
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1072
Effective search space: 725744
Effective search space used: 725744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_m12.g1 MSMg01no528_m12.g1 CHROMAT_FILE:
MSMg01no528_m12.g1 PHD_FILE: MSMg01no528_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:29 2005
(631 letters)
>mm_chr9_103795496_103796526
Length = 1031
Score = 1164 bits (602), Expect = 0.0
Identities = 629/648 (97%), Gaps = 17/648 (2%)
Strand = Plus / Plus
Query: 1 tccttacaatggcctactccttttccacctgggatatctctaaacataactgcctgtcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttacaatggcctactccttttccacctgggatatctctaaacataactgcctgtcag 260
Query: 61 cagttggcacacagagagtcactacattttccataagttgtaaaagtactttgagctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttggcacacagagagtcactacattttccataagttgtaaaagtactttgagctgtc 320
Query: 121 ttgtgaagactctttttccagatcagcaacttccctgggtgataaatgttcctaaaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgaagactctttttccagatcagcaacttccctgggtgataaatgttcctaaaccca 380
Query: 181 tatggtcactggggtaagaacccagattcctgactacacagaaaggggccctctgcctct 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatggtcactggggtgagaacccagattcctgactacacagaaaggggccctctgcctct 440
Query: 241 gcagttttgggttgaagagaaaagatgtgcccttggccaaggcagctgatggccttccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagttttgggttgaagagaaaagatgtgcccttggccaaggcagctgatggccttccac 500
Query: 301 atcactgggaaaacacacgtggcttctctcttatgcatttcccttcatccactcctgacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcactgggaaaacacacgtggcttctctcttatgcatttcccttcatccactcctgacc 560
Query: 361 ttgagaagtttgtggagttactacaatgagagccaacttacagatattagagaagtcatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgagaagtttgtggagttactacaatgagagccaacttacagatattagagaagtcatc 620
Query: 421 tctttgactttgagacaaagaggtagacttagcagatatggaaagtaacttcacttcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttgactttgagacaaagaggtagacttagcagatatggaaagtaacttcacttcaaa 680
Query: 481 ttctgcttcagataagcagagggctagaaaaatatgtgcataatattaaaatatatgttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgcttcagataagcagagggctagaaaaatatgtgcataatattaaaatatatgttc 740
Query: 541 tc-----------tctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgt 589
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgt 800
Query: 590 atgtgtgtgtgt------tgtatgctgttactatgtagcccaacttag 631
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 gtgtgtgtgtgtgtgtgttgtatgctgttactatgtagcccaacttag 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
