ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAGGCCTGATTCCCTGATAAGCTTTTAAATGTCTTTCAGTAATTAAT
TTGAAGTTGAGGTAAAATTTTATTTTTTAGTGATGTCTGCCAGAATACTG
AACCTAGAAAACCTTCAAAACTTTTAAATATAATTTATCAAAATATTGTG
TATGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTATTGGGGATAGTTCACCCACTANACAAATCTTATTTAGGTAAGGG
TAATTCATTGCAGCACAACCAGTATTTTTCTAACATTAAGCACAAGCACT
TTTGAGTTATTTTTAGCCTTAATTGACAACTCAATGAGTAGACATTTAAC
CAAACCCGAAATACTTCCGCTGCAGCTGTGTTCTCACTGTGTGGCTAACC
ACTGTGGAAGACAGAAAAAACAGTGTCCTTCTGTCCTCCTTGAATTCTCA
ATCCTGTTTGGGACAAACTGTGTACACATGAATAACTGCATGAAATACTC
AGCAACAATTAATTACTTTATGTGGTCAGGCTTGAGGTTAAGGGCTTCAG
GGAATCCATTCACCAGTGGTACATGGTGTGCATTTCAGCTATCTGGTATT
TTTAGACCTTTCTGACTCATCAGAGGTGTACATGAAACTTTCCTTTTGGC
ACATGGGCATTCTTATTCTGTGCAGATATGGAAGCTGTAATGCATGCTCG
TGCCATGCAATGTTGTTATN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGTCTGAGAA
GCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTATGATCAAA
AATTCAGGTGACGGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAGTCAG
TCTGGCAGTTCCTCAGAAAATTAGGCATAATATCCAGGGATCTACCTCAT
AATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATC
GAAAGGACCCAGATGTACCTGTCTCTTGTGAGACTATGCCTGGGTCTAGC
AAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCT
CCCAATGGAGGAGCTAGAGAAAGTACCCAAGCTGCTAAAGGGATCTGCCA
CCCTATAGGTGGAACAACATTCTGAACTAACCAGTACCCCTGAGCTCTTG
ACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCTGCCATCACTGGAA
AGAGAGGCCCATTGGACTCGCAAACTGTATATGCCCCAGCACAGGTGAAC
GTCTTGGTTCCAAAAAAAAAAAAATTGCTAATGAATGGAGATTATATACC
TTTACAATTTTCTCCC

Query= MSMg01no529_l20.b1 MSMg01no529_l20.b1 CHROMAT_FILE:
MSMg01no529_l20.b1 PHD_FILE: MSMg01no529_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:49 2005
         (544 letters)



>mm_chr9_23158212_23159151
          Length = 940

 Score =  973 bits (503), Expect = 0.0
 Identities = 530/542 (97%), Gaps = 6/542 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaggcctgattccctgataagcttttaaatgtctttcagtaattaatttgaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttaggcctgattccctgataagcttttaaatgtctttcagtaattaatttgaag 262

                                                                       
Query: 65  ttgaggtaaaattttattttttagtgatgtctgccagaatactgaacctagaaaaccttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgaggtaaaattttattttttagtgatgtctgccagaatactgaacctagaaaaccttc 322

                                                                       
Query: 125 aaaacttttaaatataatttatcaaaatattgtgtatgtgcatgtgtgtgtgtgtgtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaacttttaaatataatttatcaaaatattgtgtatgtgcatgtgtgtgtgtgtgtgtg 382

                                                                       
Query: 185 tgtgtgtgtgtgtgtgtgtgtgtgtgtgt--attggggatagttcacccactanacaaat 242
           |||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||
Sbjct: 383 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattggggatagttcacccactagacaaat 442

                                                                       
Query: 243 cttatttaggtaagggtaattcattgcagcacaaccagtatttttctaacattaagcaca 302
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctta----ggtaagggtaattcattgcagcacaaccagtatttttctaacattaagcaca 498

                                                                       
Query: 303 agcacttttgagttatttttagccttaattgacaactcaatgagtagacatttaaccaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agcacttttgagttatttttagccttaattgacaactcaatgagtagacatttaaccaaa 558

                                                                       
Query: 363 cccgaaatacttccgctgcagctgtgttctcactgtgtggctaaccactgtggaagacag 422
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cccgaaatacttctgttgcagctgtgttctcactgtgtggctaaccactgtggaagacag 618

                                                                       
Query: 423 aaaaaacagtgtccttctgtcctccttgaattctcaatcctgtttgggacaaactgtgta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaaaacagtgtccttctgtcctccttgaattctcaatcctgtttgggacaaactgtgta 678

                                                                       
Query: 483 cacatgaataactgcatgaaatactcagcaacaattaattactttatgtggtcaggcttg 542
           |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 679 cacatgaataactgcacgaaatactcagcaacaattaattagtttaggtggtcaggcttg 738

             
Query: 543 ag 544
           ||
Sbjct: 739 ag 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 940
Length adjustment: 10
Effective length of query: 534
Effective length of database: 930
Effective search space:   496620
Effective search space used:   496620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)