BAC Information

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BAC

Clone NameMSMg01-531F01
Chromosome9 (Build37)
Map Location 18,779,463 - 18,779,739
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726
Downstream geneOlfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531F01.T7 (MSMg01no531_f01.b1)MSMg01-531F01.TJ (MSMg01no531_f01.g1)
ACCAG599746AG599747
length746743
length of high quality
(start - end)
535 (212 - 746)282 (82 - 363)
definitionCHROMAT_FILE: MSMg01no531_f01.b1 PHD_FILE: MSMg01no531_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:54 2005CHROMAT_FILE: MSMg01no531_f01.g1 PHD_FILE: MSMg01no531_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCTGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAGCTGAGGAATCATGAATCTTAGAAGCACTTAAAAG
AAATGATCAATATTGTTAGTCATCAGGGAAATGCAAATCAAATGATCCTG
AGATTCCACCTCACACCAGTCAGAACAACTAAGATAAAAAAAAAAAAAAA
AACAAAACAAAACAAAAAAAAAACCCTCAGGTGACAGCAAATGCTAGCGA
GGATCTGGAGAAAGAGAAACACTCCTTCATTGCTAGTGGGATTGCAAGCT
GGTACAACCACTCTGGAAATCAGTCTGACAGTTCATCAAAAAATTGGACA
TAATGCTACAACTCCTAGGCATATACCCAAAAGATGCTCAACATATAACA
AGGATACATGCTCCACTATGTTCATTGAAGCCTTATTTATAAAAGCTAGA
AGCTGGAAACAGCCCAGGTGTACCTCAACAGAGAAATGAATACAGAAAAT
GTGATACATTCACACAATGGAGTACTACTCAGCCATTAAAAACAATGTCT
TCATGAAATTTGCTGGTAAATGGATAGAACTATAAAATTATCATCCTGAG
TGAGGTAACACAGTCACAAAAGAGCACACACGGTATTTACAAACTTATCA
GTGGATATTAGAAAAAAAATCTCGGAATACCCATGATACAACTTATAGAC
CATATGAAGTTGAGAAGAAGGAAGATCAAAAATGTAAGAAGGATTG
TTGCCTCCATGCTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAATTAAGATAATTTTA
TTGTAATTAGTTGATAATGTTTCTGAATTAATTTAACATCATTATTTTGC
TGTCATTTTTCCTATTCTCAATATATCTTCATATTTTTCTGTCTTTCAAA
TTACAAGCTTCCCTTCTGTTAACAAGAATTATCTCCTTCAGAATGTATTA
GAATAGTATCTCACTCCCTCTATTTTTTTGATATCTGATGAACTTTGGTT
CATATGAGTTTGATTTTCTAAATTTAACCATCTCTGGCTCGTTATTTGAA
CCCTTAAAAGTAATTAAGTTTTACACTTATTTTTTGTTTCATTTTACTTG
TGACTGACAAAAACTATGTACTTCAAGTTGAACTATTTAATCTTCTGTTT
TATGTCTCTCATCACCTGAAGTGCTTGGAATATAGATATGCAGTGCATAA
AATTAATGCATTGCCACTCCATTCCTTTACAAATGATATTAATCTATACT
AATGTGTGCATTTATGAGGTACAATGGGATGACTGGATTTATCCATACCT
CATTTAACATTTTATTCATATAATTTGTAAATATGCAATATCACACATTT
GTGAGTTCTATGCAGTGAGCATGGTCTATTTCTTCAAATATTCCCAGTGA
TGAAGAACATTAATATACAATAGTGTCCAAACTGTGCAGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_f01.g1 MSMg01no531_f01.g1 CHROMAT_FILE:
MSMg01no531_f01.g1 PHD_FILE: MSMg01no531_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:54 2005
         (282 letters)



>mm_chr9_18779261_18779939
          Length = 679

 Score =  472 bits (244), Expect = e-137
 Identities = 270/280 (96%), Gaps = 3/280 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   caattaagataattttattgtaattagttgataatgtttctgaattaatttaacatcatt 62
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 203 caattaagataattttattgtaattagttgat---gtttctgaattaatttaacatcatt 259

                                                                       
Query: 63  attttgctgtcatttttcctattctcaatatatcttcatatttttctgtctttcaaatta 122
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attttgatgttatttttcctattctcaatatatcttcatatttttctgtctttcaaatta 319

                                                                       
Query: 123 caagcttcccttctgttaacaagaattatctccttcagaatgtattagaatagtatctca 182
           ||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 caaacttccctcctgttaataagaattatctccttcagaatgtatttgaatagtatctca 379

                                                                       
Query: 183 ctccctctatttttttgatatctgatgaactttggttcatatgagtttgattttctaaat 242
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 ctccctctatttttttgatatctgatgagctttggttcatatgagtttgattttctaaat 439

                                                   
Query: 243 ttaaccatctctggctcgttatttgaacccttaaaagtaa 282
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaaccatctctggctcgttatttgaacccttaaaagtaa 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 679
Length adjustment: 9
Effective length of query: 273
Effective length of database: 670
Effective search space:   182910
Effective search space used:   182910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)