NTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCTTTTTCTCAGTGGTCTCACAGACACTGTATAAAGCA
GGGTGAGATTCTATACCAGCCAGGGATGTGTGCCTGACAACAGGCAACAG
TAGTAAAAATCACATTCTTCCATTGTCCTTGCCTGCTCTCTAAGTGCTCT
GTAAGTCCTTGCCTGTAAATCATGACATCTGCCACCTGATCACCTGTCAT
TGCTTGATTACTGCCTCACCAACCTGATCCATTCTTCATTCTTCTGTTTT
TTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGGCAAAATTAA
GCCTGCAAAAAAAATAAAACAAAACATATTGTTATCTACAAGTTCATAGG
CATTGCATTTTCTTAAGCAGTAATCCCTCAGCATTGCGGAATTCTCTAAG
AAGGAGTCATAAAACACTCATGTGTATATGTGGGTGTGCAAATAAACATA
TATCATCATGAAATTTCACATATTCTTTCTATGTTATTTCTCAATTTTTC
CAGATAACAACACAAAACACTTTCTATTGCAGCATTCATCATCCTGGTAA
CCCTGATGATTTAATGGTAATGTTACATCAGAATTCAACAAAATTGCTTG
AAGAAAGGAAGAACGGGTCATGTGTCACTGAGGTGTCAGCTGAAAGAAAG
CGTTAGATTCAAGCCTGAGCTTGAGAAACAGG

GGTTNCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTAGTTCCGTTC
TCCATTTTTTTTTGATAGGGTTATTTGGTTCTCTGGAGTGTAACTTGTGT
TCTTTGTATGTATAGGACATTAGCCCTCTATTGGATGTAAGATTGGTATG
CAGCAAAATGCTGGGTTCTGTTTACACATCCAGTCTCTTAGTCTATGTCT
TTTTATTGAAGAATTCAGTCCATTGATGTTAAGAGATGTACTGGCTGGTT
TTGTGTGTCAACTTGACAAAAACTGAAGTTGTCACAGAGAAAGGAGCCTC
CGTTGAGGAAATGCCTCCTTGAGATCCACCTGTAAGTCATTTTCTCAATT
AATGATCTTAGTGATCAAGGGTGAGAGGGCACATTGTGGGTGGTGCCATC
CCTGGGCTGGTAAGCCTAGCTTCCATAAGAAAGCAAGCTGAGCAAGATGG
GAAGCAAGACAGTAAGCAACATCCTTCCATGGCCTCTGCAGCAGCTCCTG
CTTCCTGACCTTCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGTACAG
CAATGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCACAACTTGCTTCT
TGGTTGTGATGTTTTGTGTAGGAATAGAAACCCTCAGTAAGACAAGCAAT
ATTAAGAAAAATTGATTGTTGCTTCCCGTTACCTTTGTTGTTAGAGG

Query= MSMg01no532_a17.b1 MSMg01no532_a17.b1 CHROMAT_FILE:
MSMg01no532_a17.b1 PHD_FILE: MSMg01no532_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:52 2005
         (632 letters)



>mm_chr9_25808342_25809377
          Length = 1036

 Score =  917 bits (474), Expect = 0.0
 Identities = 535/568 (94%), Gaps = 22/568 (3%)
 Strand = Plus / Minus

                                                                        
Query: 69   cagggatgtgtgcctgacaacaggcaacagtagtaaaaatcacattcttccattgtcctt 128
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 caggggtgtgtgcctgacaacaggcaacagtagtaaaaatcacattcttccattgtcctt 977

                                                                        
Query: 129  gcctgctctctaagtgctctgtaagtccttgcctgtaaatcatgacatctgccacctgat 188
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 976  gcctgctctctaagtgctctgtaagtccttgcctgtagatcatgacatctgccacctgat 917

                                                                        
Query: 189  cacctgtcattgcttgattactgcctcaccaacctgatccattcttcattcttctgtttt 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  cacctgtcattgcttgattactgcctcaccaacctgatccattcttcattcttctgtttt 857

                                                                        
Query: 249  ttgtttttgttttgttttgttttgttttgttttgtttttggcaaaattaagcctgcaaaa 308
            ||||||||||||                 |||| |||||||||||||||| |||||||||
Sbjct: 856  ttgtttttgttt-----------------tttt-tttttggcaaaattaaacctgcaaaa 815

                                                                        
Query: 309  a----aaataaaacaaaacatattgttatctacaagttcataggcattgcattttcttaa 364
            |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  aaaataaataaaacaaaacatattgttatctacaagttcataggcattgcattttcttaa 755

                                                                        
Query: 365  gcagtaatccctcagcattgcggaattctctaagaaggagtcataaaacactcatgtgta 424
            ||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 754  gcactaatccctcagcattgcggaattctctaagaaggagacataaaacactcgtgtgta 695

                                                                        
Query: 425  tatgtgggtgtgcaaataaacatatatcatcatgaaatttcacatattctttctatgtta 484
            ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 694  tatgtgggtatgcaaataaacatatatcatcatgaaatttcacatattcttactatgtaa 635

                                                                        
Query: 485  tttctcaatttttccagataacaacacaaaacactttctattgcagcattcatcatcctg 544
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  tttctcactttttccagataacaacacaaaacactttctattgcagcattcatcatcctg 575

                                                                        
Query: 545  gtaaccctgatgatttaatggtaatgttacatcagaattcaacaaaattgcttgaagaaa 604
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 574  gtaaccctgatgatttaatggtaatgttacataagaattcaacaaaattgcttgaagaaa 515

                                        
Query: 605  ggaagaacgggtcatgtgtcactgaggt 632
            ||||||||||||||||||||||||||||
Sbjct: 514  ggaagaacgggtcatgtgtcactgaggt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1036
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1026
Effective search space:   638172
Effective search space used:   638172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)